Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 OR4K7P-201ENST00000580232 945 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.08□□□□□ -1.92
SDC1P18827 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 AC091057.2-201ENST00000602594 792 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC128687.1-201ENST00000605304 619 ntBASIC3.08□□□□□ -1.92
SDC1P18827 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 XIST_intron.1-201ENST00000619444 68 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC091046.2-201ENST00000620775 665 ntBASIC3.08□□□□□ -1.92
SDC1P18827 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SDC1P18827 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 MTND5P24-201ENST00000438892 1767 ntBASIC3.07□□□□□ -1.92
SDC1P18827 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.07□□□□□ -1.92
SDC1P18827 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 AC244517.1-201ENST00000606030 2086 ntBASIC3.07□□□□□ -1.92
SDC1P18827 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 Y_RNA.126-201ENST00000363382 111 ntBASIC3.07□□□□□ -1.92
SDC1P18827 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 RNU6-1122P-201ENST00000384449 107 ntBASIC3.07□□□□□ -1.92
SDC1P18827 DHFRP6-201ENST00000401776 268 ntBASIC3.07□□□□□ -1.92
SDC1P18827 RNU6-712P-201ENST00000410558 100 ntBASIC3.07□□□□□ -1.92
SDC1P18827 RNU2-15P-201ENST00000410692 191 ntBASIC3.07□□□□□ -1.92
SDC1P18827 HMGN1P24-201ENST00000412282 298 ntBASIC3.07□□□□□ -1.92
SDC1P18827 RPL32P35-201ENST00000415214 394 ntBASIC3.07□□□□□ -1.92
SDC1P18827 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 RPL23AP74-201ENST00000437246 471 ntBASIC3.07□□□□□ -1.92
SDC1P18827 COX7BP2-201ENST00000437976 242 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AL359073.1-201ENST00000448036 403 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AC005297.2-201ENST00000450430 606 ntBASIC3.07□□□□□ -1.92
SDC1P18827 RPS24P6-201ENST00000452670 400 ntBASIC3.07□□□□□ -1.92
SDC1P18827 OFD1P3Y-201ENST00000453312 783 ntBASIC3.07□□□□□ -1.92
SDC1P18827 ST13P14-201ENST00000474095 734 ntBASIC3.07□□□□□ -1.92
SDC1P18827 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC092185.1-201ENST00000491371 97 ntBASIC3.07□□□□□ -1.92
SDC1P18827 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 WBP1LP4-201ENST00000505043 344 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AC020699.1-201ENST00000505161 445 ntBASIC3.07□□□□□ -1.92
SDC1P18827 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC110760.3-202ENST00000515177 371 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.07□□□□□ -1.92
SDC1P18827 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 AC126177.3-201ENST00000551839 688 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 RPL21P12-201ENST00000559810 515 ntBASIC3.07□□□□□ -1.92
SDC1P18827 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC087481.2-201ENST00000565492 330 ntBASIC3.07□□□□□ -1.92
SDC1P18827 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.07□□□□□ -1.92
SDC1P18827 AC022662.1-201ENST00000580252 331 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.07□□□□□ -1.92
SDC1P18827 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.07□□□□□ -1.92
SDC1P18827 AC012669.1-201ENST00000603209 283 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AC073657.2-201ENST00000605661 303 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AC080013.3-201ENST00000606839 578 ntBASIC3.07□□□□□ -1.92
SDC1P18827 U3.45-201ENST00000607547 219 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AL355365.1-201ENST00000616480 294 ntBASIC3.07□□□□□ -1.92
SDC1P18827 AL731566.2-201ENST00000618971 317 ntBASIC3.07□□□□□ -1.92
SDC1P18827 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.07□□□□□ -1.92
SDC1P18827 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.07□□□□□ -1.92
SDC1P18827 SNORA50A-202ENST00000629536 136 ntBASIC3.07□□□□□ -1.92
SDC1P18827 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
SDC1P18827 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.07□□□□□ -1.92
SDC1P18827 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
SDC1P18827 Z83843.1-201ENST00000604070 3685 ntBASIC3.06□□□□□ -1.92
SDC1P18827 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 MIR148B-201ENST00000362252 99 ntBASIC3.06□□□□□ -1.92
SDC1P18827 U3.6-201ENST00000363622 211 ntBASIC3.06□□□□□ -1.92
SDC1P18827 RNA5SP50-201ENST00000363731 107 ntBASIC3.06□□□□□ -1.92
SDC1P18827 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
SDC1P18827 RNU6-878P-201ENST00000384578 110 ntBASIC3.06□□□□□ -1.92
SDC1P18827 MIR513B-201ENST00000385136 84 ntBASIC3.06□□□□□ -1.92
SDC1P18827 AC007899.1-201ENST00000412776 775 ntBASIC3.06□□□□□ -1.92
SDC1P18827 RAD23BP2-201ENST00000416003 1207 ntBASIC3.06□□□□□ -1.92
SDC1P18827 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.06□□□□□ -1.92
SDC1P18827 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.06□□□□□ -1.92
SDC1P18827 NIPA2P1-201ENST00000426223 976 ntBASIC3.06□□□□□ -1.92
SDC1P18827 GOT2P5-201ENST00000433995 546 ntBASIC3.06□□□□□ -1.92
SDC1P18827 MTCO2P20-201ENST00000437339 673 ntBASIC3.06□□□□□ -1.92
SDC1P18827 FGF7P5-201ENST00000441829 291 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms