Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC015726.1-201ENST00000602353 681 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AL022099.1-201ENST00000604551 712 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AL031666.3-201ENST00000609320 1006 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC008443.7-201ENST00000622195 246 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 CR392039.5-201ENST00000623201 510 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AL356266.1-201ENST00000623311 483 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC079597.1-201ENST00000624306 508 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 AC006927.3-201ENST00000638789 384 ntBASIC4.06□□□□□ -1.76
HOXC11O43248 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXC11O43248 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
HOXC11O43248 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXC11O43248 CR383658.2-201ENST00000547576 1525 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AP002001.2-201ENST00000529025 1469 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXC11O43248 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
HOXC11O43248 MIR30B-201ENST00000384850 88 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 MIR135A2-201ENST00000384854 100 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 MIR1251-201ENST00000408552 70 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 RNA5SP129-201ENST00000410276 118 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 RNU2-43P-201ENST00000410306 190 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 RN7SKP156-201ENST00000410308 342 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 SNORA57.3-201ENST00000411095 141 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC017083.1-201ENST00000428093 483 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 SETD6P1-201ENST00000444575 317 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AC010655.1-201ENST00000449336 292 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 NANOGP10-201ENST00000453325 895 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 MTND1P9-201ENST00000453775 944 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC078785.3-201ENST00000476607 425 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC005178.1-201ENST00000508392 440 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 RNU6-352P-201ENST00000516908 107 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AC087369.1-201ENST00000520775 996 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 PCMTD1P2-201ENST00000565017 355 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC008088.1-201ENST00000580993 280 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXC11O43248 AL357094.1-201ENST00000603845 844 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AP001330.4-201ENST00000604350 154 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AC104662.1-201ENST00000604448 511 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AC090425.2-201ENST00000608818 501 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXC11O43248 AC092192.1-201ENST00000633154 1018 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 AC012442.3-202ENST00000636742 206 ntBASIC4.05□□□□□ -1.76
HOXC11O43248 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXC11O43248 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC11O43248 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC11O43248 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC11O43248 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC11O43248 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC11O43248 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HOXC11O43248 RNA5SP124-201ENST00000362739 110 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 RNU6-1078P-201ENST00000364522 103 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 RNA5SP97-201ENST00000365006 84 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXC11O43248 MIR670-201ENST00000390142 98 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 RNU6-882P-201ENST00000391025 103 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXC11O43248 RNA5SP306-201ENST00000411087 107 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC11O43248 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 JKAMPP1-201ENST00000413804 919 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC11O43248 MTCO1P39-201ENST00000426148 480 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 RSU1P2-202ENST00000437884 485 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXC11O43248 HMGB1P12-201ENST00000438594 598 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 RAC1P7-201ENST00000445367 377 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXC11O43248 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXC11O43248 AC104308.1-201ENST00000454621 333 ntBASIC4.04□□□□□ -1.76
HOXC11O43248 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms