Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 CBX3P1-201ENST00000325243 554 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNU6-511P-201ENST00000363496 107 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 Y_RNA.381-201ENST00000365666 102 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNU6-641P-201ENST00000384006 107 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL136372.1-201ENST00000403060 228 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL356776.1-201ENST00000406574 447 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNU6-712P-201ENST00000410558 100 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RN7SKP159-201ENST00000410657 292 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNA5SP107-201ENST00000411358 122 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 OR51A5P-201ENST00000415429 942 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 EIF1P3-201ENST00000423841 334 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 OR2AS1P-201ENST00000427827 319 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL671855.1-201ENST00000446875 1203 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 OR1H1P-201ENST00000448731 937 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC007967.1-201ENST00000455422 1159 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC078785.3-201ENST00000476607 425 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC114781.4-201ENST00000513707 639 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 LRRC34P2-201ENST00000514850 553 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNU6-835P-201ENST00000516974 104 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 RNU6-64P-201ENST00000517119 105 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 FAM60DP-201ENST00000524174 632 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 OR5BN1P-201ENST00000532955 829 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL049839.1-201ENST00000556151 657 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC079075.1-201ENST00000559543 878 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 MIR3667-201ENST00000581025 74 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 BNIP3P9-201ENST00000603714 553 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 BNIP3P10-201ENST00000605360 577 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL121932.1-201ENST00000605542 214 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL354950.2-201ENST00000617939 290 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL022401.1-201ENST00000619498 108 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC024940.5-201ENST00000622889 474 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC091953.3-201ENST00000623220 236 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 MIR4275-201ENST00000636486 87 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC138649.5-201ENST00000637456 137 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AC090337.1-201ENST00000579651 2074 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL356489.2-201ENST00000566968 3528 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC073544.1-201ENST00000600110 1595 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 OR52B1P-201ENST00000316506 909 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC073343.1-201ENST00000328239 651 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 Y_RNA.70-201ENST00000362886 110 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RNU6-797P-201ENST00000363101 109 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RNA5SP87-201ENST00000384155 118 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RNU6-39P-201ENST00000384344 107 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 SNORA11B-201ENST00000408175 129 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RNU2-39P-201ENST00000410604 198 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AL049745.1-201ENST00000433953 286 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC005094.1-201ENST00000440420 368 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RPS5P7-201ENST00000456664 608 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AL591473.1-201ENST00000464297 313 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RPS27AP1-201ENST00000475545 471 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 RN7SL558P-201ENST00000497468 299 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 MTCYBP18-201ENST00000501056 747 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC008628.2-201ENST00000502605 298 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC105417.1-201ENST00000514691 285 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 SNORD27.1-201ENST00000516319 72 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 SNORD60.2-201ENST00000516883 86 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 HMGB1P41-201ENST00000520234 440 ntBASIC4.79□□□□□ -1.64
TRIM39Q9HCM9 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms