Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RAP1BP1-201ENST00000412709 553 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AIMP1P1-201ENST00000418670 937 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC005517.2-201ENST00000424673 553 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 KCTD10P1-201ENST00000434203 625 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC092393.1-201ENST00000439625 742 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RPS12P18-201ENST00000442381 270 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
USP28Q96RU2 RPL21P134-201ENST00000453468 483 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RPS15AP1-201ENST00000457423 391 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 VN1R17P-201ENST00000472048 1090 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC093278.1-201ENST00000494700 600 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 RPL23AP55-201ENST00000498163 452 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC016065.2-201ENST00000514530 444 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 RNU6-1129P-201ENST00000515964 104 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 SNORA3.4-201ENST00000515969 96 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC245166.1-201ENST00000521012 253 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.65□□□□□ -1.83
USP28Q96RU2 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 NBEAP1-201ENST00000554452 979 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 HIGD1AP17-201ENST00000554576 276 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC034105.4-201ENST00000568304 277 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC008088.1-201ENST00000580993 280 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AC007566.2-201ENST00000603642 413 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AP003973.1-201ENST00000604639 691 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC069545.1-201ENST00000605671 358 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AL591516.1-201ENST00000611326 274 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 uc_338.25-201ENST00000613756 156 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 XIST_intron.1-201ENST00000619444 68 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 AC022509.4-201ENST00000621404 572 ntBASIC3.65□□□□□ -1.83
USP28Q96RU2 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
USP28Q96RU2 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.65□□□□□ -1.83
USP28Q96RU2 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP28Q96RU2 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP28Q96RU2 SAGE4P-201ENST00000442271 3381 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL049781.1-201ENST00000623195 3585 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.64□□□□□ -1.83
USP28Q96RU2 RNA5SP50-201ENST00000363731 107 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 RNU6-560P-201ENST00000364007 108 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 SNORD116-23-201ENST00000384645 92 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.64□□□□□ -1.83
USP28Q96RU2 RNU6-757P-201ENST00000410334 100 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC007899.1-201ENST00000412776 775 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL136133.1-201ENST00000413694 376 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 RPL32P35-201ENST00000415214 394 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC009237.2-201ENST00000421358 284 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 MTND5P25-201ENST00000430499 799 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 ATP5F1P1-201ENST00000433775 569 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 SETP5-201ENST00000437270 562 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 FTH1P1-201ENST00000437933 532 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL662791.1-201ENST00000441992 928 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 RPS3AP22-201ENST00000488297 769 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 KCTD9P5-201ENST00000504141 1170 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AC104090.1-201ENST00000506341 1171 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC116353.3-201ENST00000511215 249 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 RN7SKP244-201ENST00000516513 307 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AC087808.1-201ENST00000520501 361 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC093331.1-201ENST00000521474 169 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP28Q96RU2 DUXAP1-201ENST00000556632 463 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.64□□□□□ -1.83
USP28Q96RU2 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.64□□□□□ -1.83
USP28Q96RU2 AL133507.1-201ENST00000605269 557 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL158042.1-201ENST00000605338 460 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC073657.2-201ENST00000605661 303 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 SNORA51-201ENST00000606420 132 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AC131235.4-201ENST00000609288 620 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL360219.1-201ENST00000610230 366 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 AL354976.1-201ENST00000613843 387 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 MIR8058-201ENST00000615737 89 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP28Q96RU2 AC007490.1-201ENST00000624321 703 ntBASIC3.64□□□□□ -1.83
USP28Q96RU2 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.64□□□□□ -1.83
USP28Q96RU2 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.64□□□□□ -1.83
USP28Q96RU2 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.64□□□□□ -1.83
USP28Q96RU2 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms