Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC021678.1-201ENST00000505195 936 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC093752.1-206ENST00000511823 336 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC004024.1-201ENST00000549244 247 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL163153.1-201ENST00000554223 283 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 MIR5047-201ENST00000579212 100 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC006116.7-201ENST00000590141 756 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC073387.2-201ENST00000604797 784 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC007179.3-201ENST00000604976 235 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL450489.1-201ENST00000612071 468 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CYCSP41-201ENST00000616920 296 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC068831.7-201ENST00000616954 363 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AP000720.1-201ENST00000625091 483 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AL356274.2-201ENST00000624379 3752 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 RPL7P26-201ENST00000333817 754 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 MIR506-201ENST00000384998 124 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 HMGN1P24-201ENST00000412282 298 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 HMGN2P20-201ENST00000437531 273 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 HMGN1P18-201ENST00000457642 277 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AL049830.2-201ENST00000480072 201 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 RPL21P13-201ENST00000488305 481 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 CBX3P3-201ENST00000508108 532 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC104986.1-201ENST00000517978 436 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC087808.1-201ENST00000520501 361 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC024224.1-201ENST00000538284 609 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC125611.1-201ENST00000549563 229 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC037471.2-201ENST00000564941 598 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 MIR3912-201ENST00000577566 105 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC245036.5-201ENST00000596330 847 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC006254.3-201ENST00000603353 884 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC106900.2-201ENST00000604994 317 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC096577.2-201ENST00000611455 153 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC007496.3-201ENST00000624987 3443 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 AC107982.1-201ENST00000507171 1300 ntBASIC3.66□□□□□ -1.82
CCDC43Q96MW1 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC43Q96MW1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC43Q96MW1 ZNF807-201ENST00000328088 1707 ntBASIC3.65□□□□□ -1.82
CCDC43Q96MW1 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
CCDC43Q96MW1 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 SNRPEP3-201ENST00000338402 276 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RNU6-805P-201ENST00000365643 106 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL450338.1-201ENST00000407987 512 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RNA5SP293-201ENST00000410527 113 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RNA5SP120-201ENST00000410900 112 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL161449.1-201ENST00000414531 1199 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RPL23AP74-201ENST00000437246 471 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC091862.1-201ENST00000438016 1100 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 MTCYBP11-201ENST00000447254 1109 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL589880.1-201ENST00000448271 287 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RPL39P6-201ENST00000448289 150 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC125238.1-201ENST00000448842 249 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC104308.1-201ENST00000454621 333 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 RPS27P29-201ENST00000463110 252 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC021205.2-201ENST00000480069 347 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 LRRC6P1-201ENST00000532188 885 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.65□□□□□ -1.83
CCDC43Q96MW1 MED28P6-201ENST00000558776 231 ntBASIC3.65□□□□□ -1.83
CCDC43Q96MW1 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms