Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CYCSP24-201ENST00000445119 316 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC008264.1-201ENST00000447612 367 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RPL23AP31-201ENST00000456160 467 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 snoU13.24-201ENST00000458998 104 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RPL7P5-201ENST00000471472 736 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 SNRPCP3-201ENST00000474888 476 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC008638.1-201ENST00000506035 866 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 APOOP4-201ENST00000513530 597 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RNU6-1016P-201ENST00000516689 94 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AP004609.2-201ENST00000532177 190 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC137627.1-201ENST00000545761 289 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 MIR4420-201ENST00000583944 77 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 NUTF2P8-201ENST00000604593 363 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC015871.5-202ENST00000623252 701 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC092608.2-201ENST00000624427 218 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC073869.8-201ENST00000641806 335 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AC079776.5-201ENST00000641920 211 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AL049641.1-201ENST00000441055 1948 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 AL034549.2-201ENST00000618285 3373 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 KPNA2P1-201ENST00000458289 1591 ntBASIC4.4□□□□□ -1.71
CCDC140Q96MF4 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CCDC140Q96MF4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 DEFB108F-201ENST00000344638 222 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RNU4-44P-201ENST00000363050 141 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RNU6-1181P-201ENST00000384191 106 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.459-201ENST00000384251 102 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 Y_RNA.534-201ENST00000384599 112 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RNU6-95P-201ENST00000384697 107 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC005042.1-201ENST00000393397 800 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 HMGB1P20-201ENST00000402555 677 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RNU6-1050P-201ENST00000410388 107 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC096921.1-201ENST00000411661 375 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 OR2AT2P-201ENST00000413438 905 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RPS3P2-201ENST00000421346 701 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 EIF4EP1-201ENST00000422311 642 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PMCHL1-202ENST00000423102 261 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 TMEM183AP1-205ENST00000432739 290 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC073063.1-201ENST00000434352 607 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 HSPD1P21-201ENST00000436541 245 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 HIGD1AP11-201ENST00000438361 280 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PTMAP6-201ENST00000439110 327 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AL359672.1-201ENST00000442302 409 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RPL5P30-201ENST00000465511 891 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC026979.1-201ENST00000492525 396 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC116337.1-201ENST00000509680 687 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 SMURF2P1-201ENST00000514992 481 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 IGLV3-24-201ENST00000517477 197 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 OR5D15P-201ENST00000531671 942 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 MED28P6-201ENST00000558776 231 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 MIR548AC-201ENST00000585049 88 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AL354984.3-201ENST00000604803 325 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 AC009229.3-201ENST00000608056 282 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 SNORD91B-202ENST00000608459 222 ntBASIC4.39□□□□□ -1.71
CCDC140Q96MF4 RMST_9.1-201ENST00000619945 193 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms