Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SCARNA15.2-201ENST00000516409 127 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 CYCSP25-201ENST00000525280 316 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PSMA2P1-201ENST00000526365 646 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC022690.1-201ENST00000526681 550 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AP004242.1-201ENST00000533701 349 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC243972.3-201ENST00000539655 198 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 HMGN1P26-201ENST00000558737 303 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC024267.2-201ENST00000582737 417 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC002545.1-201ENST00000592511 181 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC073544.1-201ENST00000600110 1595 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 RMST_9.1-201ENST00000619945 193 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL136221.1-201ENST00000621449 509 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AC090617.10-201ENST00000624308 134 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 USP8P1-201ENST00000494673 3183 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 OR4G2P-202ENST00000641004 1759 ntBASIC4.25□□□□□ -1.73
CLRN3Q8NCR9 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 SCARNA15-201ENST00000607520 4325 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RNU1-19P-201ENST00000363306 165 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RNU6-116P-201ENST00000384042 109 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RNU6-14P-201ENST00000384630 106 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 UBE2V1P2-201ENST00000397758 440 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 Z97832.1-201ENST00000402490 328 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RPL23AP48-201ENST00000406913 488 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RNA5SP111-201ENST00000411386 101 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RPL35AP12-201ENST00000425362 338 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC130360.1-201ENST00000425489 1117 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 MTCO3P46-201ENST00000425787 232 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AL591212.2-201ENST00000433923 257 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC093414.1-201ENST00000434712 514 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RPL5P7-201ENST00000444235 813 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC104058.1-201ENST00000448028 297 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC087588.1-201ENST00000462203 316 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 MTND3P22-201ENST00000510932 243 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 RNU6-1314P-201ENST00000517139 104 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 MIR212-201ENST00000586026 110 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC034102.8-201ENST00000615146 484 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 MIR6811-201ENST00000620409 58 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC211486.4-201ENST00000621495 113 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AC073592.6-201ENST00000624271 415 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 AL442639.1-201ENST00000625030 1899 ntBASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CLRN3Q8NCR9 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms