Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MTCO1P23-201ENST00000415223 1526 ntBASIC2.98□□□□□ -1.93
SKA3Q8IX90 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.98□□□□□ -1.93
SKA3Q8IX90 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
SKA3Q8IX90 MTND5P7-201ENST00000413558 1798 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 CDR1-202ENST00000625883 1485 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 GDI2P1-201ENST00000429312 1336 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 NUP58P1-201ENST00000502546 1738 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 RNA5SP197-201ENST00000363357 119 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 U3.11-201ENST00000364476 212 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 RNU6-821P-201ENST00000390995 107 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 ARF4P3-201ENST00000397387 509 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 SNRPEP2-201ENST00000397592 279 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 RNA5SP80-201ENST00000410475 111 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 RPL7P46-201ENST00000425129 740 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AL353705.1-201ENST00000433468 480 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC007327.1-201ENST00000447461 264 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC008264.1-201ENST00000447612 367 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 CYCSP35-201ENST00000451978 304 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC012181.1-201ENST00000479895 423 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 RPL21P129-201ENST00000491732 478 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC112198.1-201ENST00000505369 1220 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 RNU6-415P-201ENST00000516252 97 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC104027.1-201ENST00000521887 300 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AP004371.1-201ENST00000525240 214 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 HIGD1AP17-201ENST00000554576 276 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 MIR3690-201ENST00000580266 75 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 MIR4444-1-201ENST00000581696 74 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 MIR4444-2-201ENST00000584390 74 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AP001269.3-201ENST00000588718 329 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 DPRXP5-201ENST00000604662 539 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC016877.3-201ENST00000606778 504 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC004832.5-201ENST00000608677 401 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC127502.3-201ENST00000636170 1206 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.97□□□□□ -1.93
SKA3Q8IX90 AC004972.1-201ENST00000623934 2209 ntBASIC2.97□□□□□ -1.93
SKA3Q8IX90 AL356274.2-201ENST00000624379 3752 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC099786.3-201ENST00000565735 1410 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 SNRPEP3-201ENST00000338402 276 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RNA5SP119-201ENST00000362715 117 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RNU6-216P-201ENST00000363282 104 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 SNORD56.3-201ENST00000363507 71 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 SNORA7.2-201ENST00000364446 145 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 SNORA51.4-201ENST00000364993 124 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 RNU6-636P-201ENST00000384598 107 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 MIR670-201ENST00000390142 98 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 U3.29-201ENST00000391296 212 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RPL31P1-201ENST00000398116 372 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 ERHP2-201ENST00000402323 299 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RNU6-584P-201ENST00000410350 95 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 BX323014.1-201ENST00000412876 237 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 HSFY4P-201ENST00000415994 1181 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL356968.1-201ENST00000416622 474 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 MTND2P9-201ENST00000422293 931 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 ZDHHC20P2-201ENST00000424108 429 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC244505.4-201ENST00000434905 287 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC092427.1-201ENST00000439177 601 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 SSXP5-201ENST00000443473 287 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 VN1R34P-201ENST00000447387 883 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 RPS20P24-201ENST00000457473 361 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 RPS15AP17-201ENST00000470598 390 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 RPS27AP1-201ENST00000475545 471 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC021205.2-201ENST00000480069 347 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 MIR2276-201ENST00000516886 89 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC107934.2-201ENST00000518653 310 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.96□□□□□ -1.94
SKA3Q8IX90 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SKA3Q8IX90 AL132657.2-201ENST00000564417 358 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 MAGOH2P-202ENST00000584384 429 ntBASIC2.96□□□□□ -1.94
SKA3Q8IX90 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms