Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU6-398P-201ENST00000384143 109 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 Y_RNA.509-201ENST00000384506 99 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 Y_RNA.529-201ENST00000384586 119 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 MT-TD-201ENST00000387419 68 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXA4Q00056 RPEP3-201ENST00000425462 676 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 RPL21P89-201ENST00000444021 467 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 Z95327.1-201ENST00000446082 482 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AC010326.1-201ENST00000462726 602 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AL049714.1-201ENST00000466686 347 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC053481.1-201ENST00000467217 306 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC006967.1-201ENST00000467608 589 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC006512.1-201ENST00000468816 291 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 ALG13-211ENST00000473389 693 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL139099.1-201ENST00000497398 403 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AC111000.3-201ENST00000508057 576 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC010486.1-201ENST00000511793 424 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AC017037.2-201ENST00000513850 890 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AP001781.1-201ENST00000530977 207 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 OR5B19P-201ENST00000531766 928 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL138976.2-201ENST00000563989 694 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AC015917.1-201ENST00000579654 510 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC011712.1-201ENST00000588959 234 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AL451044.1-201ENST00000604867 238 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC087045.1-201ENST00000605856 382 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 AL121757.2-201ENST00000611223 313 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC233309.1-201ENST00000619522 751 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 AC002550.2-201ENST00000621246 394 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA4Q00056 USP45-204ENST00000369233 2514 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA4Q00056 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXA4Q00056 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
HOXA4Q00056 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA4Q00056 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXA4Q00056 ZNF734P-201ENST00000419494 1534 ntBASIC3.9□□□□□ -1.79
HOXA4Q00056 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXA4Q00056 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA4Q00056 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA4Q00056 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 Y_RNA.142-201ENST00000363491 102 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 RNU5A-8P-201ENST00000364102 114 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 SNORA56-201ENST00000383966 129 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 RNU6-767P-201ENST00000384132 107 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 RNA5SP332-201ENST00000391063 115 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA4Q00056 GLULP6-201ENST00000399502 913 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AL354719.1-201ENST00000406535 843 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXA4Q00056 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 GNG5P5-201ENST00000420444 220 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC093156.1-201ENST00000440382 670 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC079781.2-201ENST00000446424 169 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC007686.1-201ENST00000488511 463 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC007016.1-201ENST00000512110 244 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 RN7SKP46-201ENST00000515942 234 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 OR5BC1P-201ENST00000529327 739 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 ARL2BPP2-201ENST00000550907 489 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC079075.1-201ENST00000559543 878 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 RPS3AP23-202ENST00000574601 686 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 COX6CP3-201ENST00000580869 223 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC209154.1-201ENST00000582156 337 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC018638.8-201ENST00000588755 281 ntBASIC3.89□□□□□ -1.79
HOXA4Q00056 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA4Q00056 AC008745.1-201ENST00000604064 271 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms