Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC106734.1-201ENST00000568646 663 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC2.47□□□□□ -2.01
FOXA1P55317 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.47□□□□□ -2.01
FOXA1P55317 AC010928.3-201ENST00000587712 541 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AL451007.1-201ENST00000595491 289 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC008687.2-201ENST00000597865 520 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AL671309.1-201ENST00000603750 544 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC090617.7-201ENST00000623952 126 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC092608.3-201ENST00000625017 386 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 AC046144.1-201ENST00000478559 1853 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.47□□□□□ -2.01
FOXA1P55317 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.46□□□□□ -2.01
FOXA1P55317 MFSD8-213ENST00000641134 1327 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA1P55317 RNU6-792P-201ENST00000363490 107 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
FOXA1P55317 BTBD10P2-201ENST00000404779 676 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA1P55317 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA1P55317 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA1P55317 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA1P55317 AL590103.1-201ENST00000434488 307 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA1P55317 AC105272.1-201ENST00000438604 198 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 MTND1P33-201ENST00000446251 917 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 NPM1P49-201ENST00000448027 714 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AL353718.1-201ENST00000451028 517 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 RPL21P104-201ENST00000464143 478 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC015724.1-201ENST00000478577 156 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 RPS3AP14-201ENST00000483907 780 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC034159.1-201ENST00000513885 583 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC016065.2-201ENST00000514530 444 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 HIGD1AP3-201ENST00000515857 278 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA1P55317 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.46□□□□□ -2.02
FOXA1P55317 LARP7P3-201ENST00000579888 337 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 MIR5092-201ENST00000583139 88 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC2.46□□□□□ -2.02
FOXA1P55317 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA1P55317 AC096586.1-201ENST00000610267 561 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 AC131902.3-201ENST00000611767 581 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 U73479.1-201ENST00000618062 168 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 MIR6852-201ENST00000621699 66 ntBASIC2.46□□□□□ -2.02
FOXA1P55317 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC2.46□□□□□ -2.02
FOXA1P55317 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
FOXA1P55317 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.46□□□□□ -2.02
FOXA1P55317 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
FOXA1P55317 AC004925.1-201ENST00000624256 2706 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.45□□□□□ -2.02
FOXA1P55317 SNORD62.1-201ENST00000362541 86 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 SNORD56.4-201ENST00000363883 71 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 SNORA51.12-201ENST00000384448 134 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 TANK-206ENST00000406287 875 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA1P55317 AL354719.1-201ENST00000406535 843 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 MIR1250-201ENST00000408098 113 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 RNU4-27P-201ENST00000410889 139 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL445183.3-201ENST00000414168 502 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 EI24P1-201ENST00000416584 867 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 BOLA3P4-201ENST00000418151 400 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA1P55317 MTND4P15-201ENST00000437913 1033 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 Z77249.1-201ENST00000444622 1175 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 ANKRD30BP3-201ENST00000444850 1070 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA1P55317 RPL23AP20-201ENST00000447965 421 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL590639.1-201ENST00000456484 337 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA1P55317 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA1P55317 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC2.45□□□□□ -2.02
FOXA1P55317 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 AC104108.1-201ENST00000509930 412 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AC025768.1-201ENST00000510057 267 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA1P55317 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.45□□□□□ -2.02
FOXA1P55317 AC024224.1-201ENST00000538284 609 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 SETP2-201ENST00000553886 926 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AC138761.3-201ENST00000579993 334 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 VN1R90P-201ENST00000595717 726 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 AC010297.1-201ENST00000623948 149 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL109659.3-201ENST00000624985 950 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.45□□□□□ -2.02
FOXA1P55317 AL356118.1-201ENST00000635272 1078 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 CRYM-AS1-204ENST00000637983 556 ntBASIC2.45□□□□□ -2.02
FOXA1P55317 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.45□□□□□ -2.02
FOXA1P55317 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA1P55317 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
FOXA1P55317 MTCO1P24-201ENST00000515438 1558 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.44□□□□□ -2.02
FOXA1P55317 AC008432.1-201ENST00000615912 1320 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.44□□□□□ -2.02
FOXA1P55317 AC007336.1-201ENST00000576365 3828 ntBASIC2.44□□□□□ -2.02
FOXA1P55317 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
FOXA1P55317 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.44□□□□□ -2.02
FOXA1P55317 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms