Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007671.2-201ENST00000637344 619 ntBASIC3.28□□□□□ -1.88
CDX1P47902 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
CDX1P47902 AP002001.2-201ENST00000529025 1469 ntBASIC3.28□□□□□ -1.88
CDX1P47902 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 AL353746.1-201ENST00000566293 6881 ntBASIC3.27□□□□□ -1.89
CDX1P47902 CR381670.1-201ENST00000624291 1693 ntBASIC3.27□□□□□ -1.89
CDX1P47902 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 MIR184-201ENST00000384962 84 ntBASIC3.27□□□□□ -1.89
CDX1P47902 SNORD66.1-201ENST00000391230 76 ntBASIC3.27□□□□□ -1.89
CDX1P47902 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AP000567.1-201ENST00000406413 156 ntBASIC3.27□□□□□ -1.89
CDX1P47902 MIR1305-201ENST00000408300 86 ntBASIC3.27□□□□□ -1.89
CDX1P47902 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 RN7SKP263-201ENST00000411194 309 ntBASIC3.27□□□□□ -1.89
CDX1P47902 PGBD4P8-201ENST00000412993 562 ntBASIC3.27□□□□□ -1.89
CDX1P47902 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 YPEL5P1-201ENST00000419731 367 ntBASIC3.27□□□□□ -1.89
CDX1P47902 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AC096638.2-201ENST00000434965 711 ntBASIC3.27□□□□□ -1.89
CDX1P47902 SNORA71B-202ENST00000439232 272 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 HSFY6P-201ENST00000445573 403 ntBASIC3.27□□□□□ -1.89
CDX1P47902 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 AP000542.1-201ENST00000448473 371 ntBASIC3.27□□□□□ -1.89
CDX1P47902 RPS11P1-201ENST00000451072 473 ntBASIC3.27□□□□□ -1.89
CDX1P47902 VN1R40P-201ENST00000455196 941 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AL139824.2-201ENST00000458731 1095 ntBASIC3.27□□□□□ -1.89
CDX1P47902 RNA5SP246-201ENST00000458909 119 ntBASIC3.27□□□□□ -1.89
CDX1P47902 RPS29P19-201ENST00000479709 171 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 AC022447.3-201ENST00000506865 495 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 AC022483.1-201ENST00000514020 567 ntBASIC3.27□□□□□ -1.89
CDX1P47902 IGKV2-38-201ENST00000517443 247 ntBASIC3.27□□□□□ -1.89
CDX1P47902 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.27□□□□□ -1.89
CDX1P47902 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AC087276.1-201ENST00000529659 480 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AP004247.1-201ENST00000531556 1289 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.27□□□□□ -1.89
CDX1P47902 AC068587.4-201ENST00000533893 186 ntBASIC3.27□□□□□ -1.89
CDX1P47902 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.27□□□□□ -1.89
CDX1P47902 AL391156.1-201ENST00000554965 554 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.27□□□□□ -1.89
CDX1P47902 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.27□□□□□ -1.89
CDX1P47902 AL357094.1-201ENST00000603845 844 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC018714.1-201ENST00000605028 208 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AP002826.1-201ENST00000608835 315 ntBASIC3.27□□□□□ -1.89
CDX1P47902 RMST_8.1-201ENST00000610287 165 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC064801.1-201ENST00000612025 407 ntBASIC3.27□□□□□ -1.89
CDX1P47902 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.27□□□□□ -1.89
CDX1P47902 AC068831.8-201ENST00000620171 435 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC079416.3-201ENST00000624479 549 ntBASIC3.27□□□□□ -1.89
CDX1P47902 AC010608.2-201ENST00000624830 470 ntBASIC3.27□□□□□ -1.89
CDX1P47902 PCMTD1P7-201ENST00000634506 357 ntBASIC3.27□□□□□ -1.89
CDX1P47902 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CDX1P47902 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CDX1P47902 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CDX1P47902 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 MTND4P16-201ENST00000466108 1367 ntBASIC3.26□□□□□ -1.89
CDX1P47902 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
CDX1P47902 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CDX1P47902 AL021368.2-201ENST00000606125 5352 ntBASIC3.26□□□□□ -1.89
CDX1P47902 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CDX1P47902 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CDX1P47902 RNU6-114P-201ENST00000384704 105 ntBASIC3.26□□□□□ -1.89
CDX1P47902 RPS3AP24-201ENST00000407896 734 ntBASIC3.26□□□□□ -1.89
CDX1P47902 RN7SKP33-201ENST00000410942 340 ntBASIC3.26□□□□□ -1.89
CDX1P47902 RPL7AP73-201ENST00000413490 353 ntBASIC3.26□□□□□ -1.89
CDX1P47902 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.26□□□□□ -1.89
CDX1P47902 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms