Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC2.66□□□□□ -1.98
COL5A3P25940 MTND2P13-201ENST00000577438 1039 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC2.66□□□□□ -1.98
COL5A3P25940 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A3P25940 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC2.66□□□□□ -1.98
COL5A3P25940 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A3P25940 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A3P25940 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A3P25940 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A3P25940 NSRP1P1-201ENST00000444067 1693 ntBASIC2.66□□□□□ -1.98
COL5A3P25940 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
COL5A3P25940 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
COL5A3P25940 RNU1-51P-201ENST00000365345 176 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.65□□□□□ -1.98
COL5A3P25940 DEFA7P-201ENST00000382676 285 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 RNA5SP213-201ENST00000391031 106 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 EI24P1-201ENST00000416584 867 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 HMGB3P10-201ENST00000434734 572 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.65□□□□□ -1.98
COL5A3P25940 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.65□□□□□ -1.98
COL5A3P25940 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.65□□□□□ -1.98
COL5A3P25940 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.65□□□□□ -1.98
COL5A3P25940 YWHAEP7-203ENST00000622054 312 ntBASIC2.65□□□□□ -1.98
COL5A3P25940 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.98
COL5A3P25940 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL5A3P25940 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.65□□□□□ -1.99
COL5A3P25940 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL5A3P25940 Y_RNA.338-201ENST00000365320 114 ntBASIC2.65□□□□□ -1.99
COL5A3P25940 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.65□□□□□ -1.99
COL5A3P25940 AC003989.2-201ENST00000440224 169 ntBASIC2.65□□□□□ -1.99
COL5A3P25940 AC117522.2-201ENST00000510049 657 ntBASIC2.65□□□□□ -1.99
COL5A3P25940 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC2.65□□□□□ -1.99
COL5A3P25940 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.65□□□□□ -1.99
COL5A3P25940 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.65□□□□□ -1.99
COL5A3P25940 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.65□□□□□ -1.99
COL5A3P25940 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.65□□□□□ -1.99
COL5A3P25940 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC2.65□□□□□ -1.99
COL5A3P25940 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.64□□□□□ -1.99
COL5A3P25940 MIR6073-201ENST00000352083 89 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.64□□□□□ -1.99
COL5A3P25940 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.64□□□□□ -1.99
COL5A3P25940 Z82205.1-201ENST00000428456 297 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.64□□□□□ -1.99
COL5A3P25940 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.64□□□□□ -1.99
COL5A3P25940 AC091179.1-201ENST00000461606 579 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 RPL38P4-201ENST00000502376 214 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC2.64□□□□□ -1.99
COL5A3P25940 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.64□□□□□ -1.99
COL5A3P25940 OR5D17P-201ENST00000531492 978 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 AC115989.2-201ENST00000578640 563 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 VN1R81P-201ENST00000602085 372 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 AC091488.1-201ENST00000604239 660 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 AC091834.1-201ENST00000614543 472 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 MIR8070-201ENST00000616510 88 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.64□□□□□ -1.99
COL5A3P25940 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL5A3P25940 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL5A3P25940 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
COL5A3P25940 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
COL5A3P25940 AC010680.1-201ENST00000590024 3590 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC005539.1-201ENST00000443768 1479 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC2.63□□□□□ -1.99
COL5A3P25940 AL161431.1-201ENST00000618966 4205 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 MTND4P35-201ENST00000604257 1375 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 RNU6-1331P-201ENST00000363658 106 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 DHFRP5-201ENST00000406944 564 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 TRAPPC2P10-201ENST00000415662 323 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
COL5A3P25940 AC048351.1-201ENST00000420064 602 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.63□□□□□ -1.99
COL5A3P25940 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC243772.1-201ENST00000451620 410 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 RPL23AP44-201ENST00000482216 473 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC023043.3-201ENST00000593113 385 ntBASIC2.63□□□□□ -1.99
COL5A3P25940 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC2.63□□□□□ -1.99
COL5A3P25940 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
COL5A3P25940 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.63□□□□□ -1.99
COL5A3P25940 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.62□□□□□ -1.99
COL5A3P25940 SAR1AP2-201ENST00000392696 594 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC2.62□□□□□ -1.99
COL5A3P25940 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.62□□□□□ -1.99
COL5A3P25940 RPL23AP70-201ENST00000483361 460 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 MTCO3P42-201ENST00000509488 518 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 MTCO3P39-201ENST00000514812 518 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC2.62□□□□□ -1.99
COL5A3P25940 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC2.62□□□□□ -1.99
COL5A3P25940 AC093673.2-201ENST00000609674 331 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 AL159169.2-201ENST00000610061 1269 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.62□□□□□ -1.99
COL5A3P25940 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
COL5A3P25940 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL5A3P25940 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL5A3P25940 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL5A3P25940 SNORA26.9-201ENST00000391322 122 ntBASIC2.62□□□□□ -1.99
COL5A3P25940 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL5A3P25940 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms