Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.65□□□□□ -1.83
MSH3P20585 Z99497.1-201ENST00000421282 135 ntBASIC3.65□□□□□ -1.83
MSH3P20585 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.65□□□□□ -1.83
MSH3P20585 OR51AB1P-201ENST00000429046 620 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC244035.1-201ENST00000430042 390 ntBASIC3.65□□□□□ -1.83
MSH3P20585 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
MSH3P20585 RPL29P29-201ENST00000448725 423 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC010655.1-201ENST00000449336 292 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC104073.1-201ENST00000451988 151 ntBASIC3.65□□□□□ -1.83
MSH3P20585 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.65□□□□□ -1.83
MSH3P20585 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.65□□□□□ -1.83
MSH3P20585 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
MSH3P20585 U8.18-201ENST00000459285 133 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AP000873.1-201ENST00000463987 400 ntBASIC3.65□□□□□ -1.83
MSH3P20585 RPL9P32-201ENST00000464118 620 ntBASIC3.65□□□□□ -1.83
MSH3P20585 FTH1P2-201ENST00000466086 412 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC022034.3-201ENST00000471393 478 ntBASIC3.65□□□□□ -1.83
MSH3P20585 ACTR3P3-201ENST00000480448 893 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.65□□□□□ -1.83
MSH3P20585 AC114981.1-201ENST00000503897 678 ntBASIC3.65□□□□□ -1.83
MSH3P20585 DSTNP2-201ENST00000504533 515 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.65□□□□□ -1.83
MSH3P20585 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.65□□□□□ -1.83
MSH3P20585 PTGES3P3-201ENST00000511479 482 ntBASIC3.65□□□□□ -1.83
MSH3P20585 MTCYBP43-201ENST00000513621 740 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC104986.1-201ENST00000517978 436 ntBASIC3.65□□□□□ -1.83
MSH3P20585 IGKV2-23-201ENST00000518729 323 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC106038.2-201ENST00000520706 568 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.65□□□□□ -1.83
MSH3P20585 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.65□□□□□ -1.83
MSH3P20585 AC008127.2-201ENST00000549925 1075 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.65□□□□□ -1.83
MSH3P20585 ACTR3BP3-201ENST00000565577 979 ntBASIC3.65□□□□□ -1.83
MSH3P20585 YWHAQP7-201ENST00000603536 658 ntBASIC3.65□□□□□ -1.83
MSH3P20585 MTCYBP22-201ENST00000603788 447 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AL109618.2-201ENST00000605527 211 ntBASIC3.65□□□□□ -1.83
MSH3P20585 RNA5SP108-201ENST00000605921 117 ntBASIC3.65□□□□□ -1.83
MSH3P20585 RNU6-88P-201ENST00000606801 100 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AL161637.1-201ENST00000622380 412 ntBASIC3.65□□□□□ -1.83
MSH3P20585 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.65□□□□□ -1.83
MSH3P20585 AC092192.1-201ENST00000633154 1018 ntBASIC3.65□□□□□ -1.83
MSH3P20585 U6.101-201ENST00000637707 76 ntBASIC3.65□□□□□ -1.83
MSH3P20585 AC130650.2-201ENST00000618736 2403 ntBASIC3.65□□□□□ -1.83
MSH3P20585 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
MSH3P20585 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
MSH3P20585 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
MSH3P20585 RNU6-462P-201ENST00000362659 105 ntBASIC3.64□□□□□ -1.83
MSH3P20585 RNU6-374P-201ENST00000364146 108 ntBASIC3.64□□□□□ -1.83
MSH3P20585 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 MT-TH-201ENST00000387441 69 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC016769.3-201ENST00000396562 315 ntBASIC3.64□□□□□ -1.83
MSH3P20585 EIF5P1-201ENST00000400019 1231 ntBASIC3.64□□□□□ -1.83
MSH3P20585 HMGB1P17-201ENST00000403495 628 ntBASIC3.64□□□□□ -1.83
MSH3P20585 TPMTP3-201ENST00000411928 735 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 NPM1P11-201ENST00000417106 855 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.64□□□□□ -1.83
MSH3P20585 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 PSMA2P3-201ENST00000429685 675 ntBASIC3.64□□□□□ -1.83
MSH3P20585 ZYG11AP1-201ENST00000430329 837 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.64□□□□□ -1.83
MSH3P20585 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.64□□□□□ -1.83
MSH3P20585 AC122718.1-201ENST00000439448 744 ntBASIC3.64□□□□□ -1.83
MSH3P20585 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.64□□□□□ -1.83
MSH3P20585 EEF1E1P1-201ENST00000446998 430 ntBASIC3.64□□□□□ -1.83
MSH3P20585 FAM133DP-201ENST00000464802 691 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC146507.1-201ENST00000468335 354 ntBASIC3.64□□□□□ -1.83
MSH3P20585 RPL7L1P8-201ENST00000469911 741 ntBASIC3.64□□□□□ -1.83
MSH3P20585 RPS15AP17-201ENST00000470598 390 ntBASIC3.64□□□□□ -1.83
MSH3P20585 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 RAP1BP2-201ENST00000478270 544 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AP001086.1-201ENST00000494882 321 ntBASIC3.64□□□□□ -1.83
MSH3P20585 OR2A20P-203ENST00000498397 1268 ntBASIC3.64□□□□□ -1.83
MSH3P20585 TMEM248P1-201ENST00000510579 951 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 MTND5P13-201ENST00000513046 1079 ntBASIC3.64□□□□□ -1.83
MSH3P20585 HIGD1AP3-201ENST00000515857 278 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 AC008489.1-201ENST00000524271 483 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC087276.1-201ENST00000529659 480 ntBASIC3.64□□□□□ -1.83
MSH3P20585 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.64□□□□□ -1.83
MSH3P20585 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.64□□□□□ -1.83
MSH3P20585 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 ROCK1P1-201ENST00000573767 549 ntBASIC3.64□□□□□ -1.83
MSH3P20585 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.64□□□□□ -1.83
MSH3P20585 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.64□□□□□ -1.83
MSH3P20585 AP001981.2-201ENST00000603241 418 ntBASIC3.64□□□□□ -1.83
MSH3P20585 BNIP3P11-201ENST00000603878 563 ntBASIC3.64□□□□□ -1.83
MSH3P20585 RNU1-30P-201ENST00000606575 163 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC106028.5-201ENST00000610332 395 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC073114.1-201ENST00000612027 490 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms