Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC018755.4-201ENST00000619715 454 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AL356863.1-201ENST00000623378 1080 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC091903.1-201ENST00000624322 454 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AP001002.2-201ENST00000625137 386 ntBASIC3.1□□□□□ -1.91
SDC1P18827 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 AF117829.1-206ENST00000621883 3802 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AP002907.1-201ENST00000606361 1430 ntBASIC3.1□□□□□ -1.91
SDC1P18827 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
SDC1P18827 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.09□□□□□ -1.91
SDC1P18827 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 RNU6-600P-201ENST00000362524 99 ntBASIC3.09□□□□□ -1.91
SDC1P18827 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 Y_RNA.465-201ENST00000384293 102 ntBASIC3.09□□□□□ -1.91
SDC1P18827 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 AL592310.1-201ENST00000414330 671 ntBASIC3.09□□□□□ -1.91
SDC1P18827 HMGB3P23-201ENST00000414981 585 ntBASIC3.09□□□□□ -1.91
SDC1P18827 ELOCP9-201ENST00000418624 239 ntBASIC3.09□□□□□ -1.91
SDC1P18827 RPL21P112-201ENST00000434403 463 ntBASIC3.09□□□□□ -1.91
SDC1P18827 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SDC1P18827 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.09□□□□□ -1.91
SDC1P18827 RPL21P134-201ENST00000453468 483 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.09□□□□□ -1.91
SDC1P18827 USP9YP25-201ENST00000457708 443 ntBASIC3.09□□□□□ -1.91
SDC1P18827 RPL31P13-201ENST00000484151 370 ntBASIC3.09□□□□□ -1.91
SDC1P18827 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 TMEM251P1-201ENST00000503717 318 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 RN7SKP244-201ENST00000516513 307 ntBASIC3.09□□□□□ -1.91
SDC1P18827 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 AC068657.1-201ENST00000520807 306 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.09□□□□□ -1.91
SDC1P18827 OR4P1P-201ENST00000530808 1136 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.09□□□□□ -1.91
SDC1P18827 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.09□□□□□ -1.91
SDC1P18827 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 EEF1B2P4-201ENST00000551398 348 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.09□□□□□ -1.91
SDC1P18827 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.09□□□□□ -1.91
SDC1P18827 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 BNIP3P5-201ENST00000562290 498 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.09□□□□□ -1.91
SDC1P18827 RPL23AP92-201ENST00000603609 255 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC105148.1-201ENST00000604961 409 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC243773.3-201ENST00000613270 256 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AL157817.1-201ENST00000614264 790 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC006386.1-201ENST00000619436 415 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC109809.1-201ENST00000619665 545 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC013470.4-201ENST00000619978 986 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC048347.1-201ENST00000624621 427 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC091925.2-201ENST00000625059 256 ntBASIC3.09□□□□□ -1.91
SDC1P18827 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.09□□□□□ -1.91
SDC1P18827 AC116618.1-201ENST00000634617 774 ntBASIC3.09□□□□□ -1.91
SDC1P18827 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.09□□□□□ -1.91
SDC1P18827 AC090897.3-201ENST00000636973 1157 ntBASIC3.09□□□□□ -1.91
SDC1P18827 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
SDC1P18827 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.08□□□□□ -1.92
SDC1P18827 RNU6-621P-201ENST00000364752 109 ntBASIC3.08□□□□□ -1.92
SDC1P18827 MIR490-201ENST00000384865 128 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC025750.1-201ENST00000399891 379 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 AC092447.6-201ENST00000414578 210 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC245052.5-201ENST00000416320 649 ntBASIC3.08□□□□□ -1.92
SDC1P18827 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 PSMA6P3-201ENST00000428242 164 ntBASIC3.08□□□□□ -1.92
SDC1P18827 HMGN2P31-201ENST00000432430 273 ntBASIC3.08□□□□□ -1.92
SDC1P18827 ATP5F1P1-201ENST00000433775 569 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC084290.1-201ENST00000434995 374 ntBASIC3.08□□□□□ -1.92
SDC1P18827 ELOCP13-201ENST00000443934 329 ntBASIC3.08□□□□□ -1.92
SDC1P18827 RPS27P29-201ENST00000463110 252 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC010285.1-201ENST00000470580 392 ntBASIC3.08□□□□□ -1.92
SDC1P18827 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SDC1P18827 AC021678.1-201ENST00000505195 936 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC021146.8-201ENST00000507455 733 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC079395.1-201ENST00000510981 262 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC116353.3-201ENST00000511215 249 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 RNU6-583P-201ENST00000516012 92 ntBASIC3.08□□□□□ -1.92
SDC1P18827 SNORA31.20-201ENST00000517111 133 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 AC023632.4-201ENST00000517783 191 ntBASIC3.08□□□□□ -1.92
SDC1P18827 MTCO1P49-201ENST00000523429 802 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.08□□□□□ -1.92
SDC1P18827 TRAV37-201ENST00000553906 342 ntBASIC3.08□□□□□ -1.92
SDC1P18827 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.08□□□□□ -1.92
SDC1P18827 HSPE1P3-201ENST00000559254 309 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AC090695.1-201ENST00000561269 1222 ntBASIC3.08□□□□□ -1.92
SDC1P18827 AL845331.3-202ENST00000562856 261 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms