Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AL139095.1-201ENST00000404326 391 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 RNA5SP120-201ENST00000410900 112 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 UBE2V1P11-201ENST00000411559 285 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 TATDN1P1-201ENST00000414123 891 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 UBE2V1P9-201ENST00000414760 368 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 MTCO3P12-201ENST00000416718 547 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC073508.1-201ENST00000428866 656 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC091862.1-201ENST00000438016 1100 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AL513043.1-201ENST00000439124 535 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC093156.1-201ENST00000440382 670 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AL445669.2-201ENST00000454425 421 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 MTND2P6-201ENST00000455337 1030 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC027673.1-201ENST00000456245 405 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 BTF3P5-201ENST00000457252 467 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 RPS4XP10-201ENST00000465034 731 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 RPS27P23-201ENST00000487608 251 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 RPL21P131-201ENST00000497298 483 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC090136.1-201ENST00000520009 240 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 HMGB1P41-201ENST00000520234 440 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 CKS1BP1-201ENST00000555221 240 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 MIR5680-201ENST00000577577 84 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 XIAPP1-201ENST00000603162 600 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 CYCSP41-201ENST00000616920 296 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 SNHG22-203ENST00000617833 660 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC006111.3-201ENST00000622137 383 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.77□□□□□ -1.97
USH1CQ9Y6N9 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 RNVU1-3-201ENST00000364313 161 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 DEFA7P-201ENST00000382676 285 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 RNU6-1005P-201ENST00000384519 107 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 ATP5F1P6-201ENST00000402768 767 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 HMGN2P35-201ENST00000412164 270 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 PAICSP7-201ENST00000419829 962 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC127537.2-201ENST00000439258 465 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 RPS26P30-201ENST00000443431 335 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 BX510359.1-201ENST00000456973 237 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC104472.2-201ENST00000469035 601 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 OR2A20P-203ENST00000498397 1268 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC025881.1-201ENST00000518851 512 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC022690.1-201ENST00000526681 550 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AL160237.3-201ENST00000604114 1013 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AL513477.2-201ENST00000607858 568 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 FRG1HP-204ENST00000617940 757 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC018755.4-201ENST00000619715 454 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC010297.1-201ENST00000623948 149 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 AC104820.1-201ENST00000624183 307 ntBASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
USH1CQ9Y6N9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC233728.2-201ENST00000425348 757 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC005326.1-201ENST00000429197 123 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 SNRPEP4-201ENST00000435815 279 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AL591503.2-201ENST00000442314 1005 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 KC877373.1-201ENST00000479066 408 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 GAPDHP39-201ENST00000481866 979 ntBASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.75□□□□□ -1.97
USH1CQ9Y6N9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms