Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC068587.1-201ENST00000483613 781 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC109464.2-201ENST00000510242 943 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC105185.1-201ENST00000518705 535 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 OR5AP1P-201ENST00000529730 940 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 RNU6-88P-201ENST00000606801 100 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC004067.1-201ENST00000608733 700 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC092106.3-201ENST00000611308 722 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 MIR6076-201ENST00000617521 113 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC244205.2-202ENST00000635781 342 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 AC008568.2-201ENST00000623862 2313 ntBASIC3.15□□□□□ -1.91
FOXA2Q9Y261 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
FOXA2Q9Y261 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RLIMP1-201ENST00000339626 1680 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RNU6-777P-201ENST00000364265 104 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RNU6-76P-201ENST00000384060 104 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 Y_RNA.548-201ENST00000384656 105 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 SNORA1.3-201ENST00000384676 136 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RNU1-101P-201ENST00000391171 127 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RNU4-6P-201ENST00000410804 122 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC004975.1-201ENST00000428733 208 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 TXNL1P1-201ENST00000429528 554 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC090774.1-201ENST00000435925 246 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC112653.1-201ENST00000443851 386 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RANP8-201ENST00000444720 713 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 ARPC3P2-201ENST00000457786 533 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 UBDP1-202ENST00000457888 382 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 RNU7-170P-201ENST00000459303 61 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC034244.1-201ENST00000507687 207 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 MIR2114-201ENST00000516645 80 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC087369.1-201ENST00000520775 996 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC090877.1-201ENST00000561418 344 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC007224.1-201ENST00000564410 144 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC034268.2-201ENST00000571784 482 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC011260.1-201ENST00000578420 472 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AL034351.1-201ENST00000605288 668 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AP000254.1-201ENST00000609934 520 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC243312.2-201ENST00000623340 601 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AL159972.1-201ENST00000625150 448 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC103706.2-201ENST00000638080 240 ntBASIC3.14□□□□□ -1.91
FOXA2Q9Y261 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
FOXA2Q9Y261 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.13□□□□□ -1.91
FOXA2Q9Y261 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA2Q9Y261 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA2Q9Y261 AC012321.1-201ENST00000561622 1588 ntBASIC3.13□□□□□ -1.91
FOXA2Q9Y261 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA2Q9Y261 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
FOXA2Q9Y261 AL138878.1-201ENST00000405131 347 ntBASIC3.13□□□□□ -1.91
FOXA2Q9Y261 RNU6-1077P-201ENST00000410506 102 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms