Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC090186.1-201ENST00000605991 572 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 RNU6-88P-201ENST00000606801 100 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 AL590099.1-201ENST00000615276 138 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS28Q9UK41 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS28Q9UK41 HSPA8P1-201ENST00000425843 1833 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
VPS28Q9UK41 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS28Q9UK41 PRO1804-201ENST00000623780 2050 ntBASIC3.9□□□□□ -1.79
VPS28Q9UK41 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 Z98941.1-201ENST00000407764 100 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 RNU4-65P-201ENST00000410473 140 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 PIGPP2-201ENST00000411569 458 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 CCDC58P2-201ENST00000417131 366 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AL139247.1-201ENST00000422768 325 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AL590103.1-201ENST00000434488 307 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 MTCYBP34-201ENST00000439552 670 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 NOTCH2P1-201ENST00000443481 624 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 SETD6P1-201ENST00000444575 317 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 SNORA84-201ENST00000459229 133 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC004069.2-201ENST00000505438 1114 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 MTCYBP43-201ENST00000513621 740 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 RN7SKP287-201ENST00000516546 266 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 RNU6-714P-201ENST00000516963 103 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC103783.1-201ENST00000520506 373 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 UBTFL10-201ENST00000528532 562 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 OR4K8P-201ENST00000578842 1048 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC011468.4-201ENST00000603942 409 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC012443.1-201ENST00000605605 231 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC103706.2-201ENST00000638080 240 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS28Q9UK41 AC087359.1-201ENST00000508335 1740 ntBASIC3.89□□□□□ -1.79
VPS28Q9UK41 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
VPS28Q9UK41 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS28Q9UK41 TAB3P1-202ENST00000452645 1634 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AP001148.1-201ENST00000624124 2359 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
VPS28Q9UK41 RNU6-289P-201ENST00000364093 107 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AL136372.1-201ENST00000403060 228 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 RNU2-43P-201ENST00000410306 190 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 SSXP9-201ENST00000417503 292 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 RPL21P109-201ENST00000422213 475 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 RAC1P7-201ENST00000445367 377 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 MTCO3P16-201ENST00000454456 754 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC104685.1-201ENST00000502445 371 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC147055.4-201ENST00000504399 745 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 RN7SKP13-201ENST00000515933 244 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC090877.1-201ENST00000561418 344 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.88□□□□□ -1.79
VPS28Q9UK41 MIR4644-201ENST00000579929 84 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC020914.6-201ENST00000594327 272 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC011451.2-201ENST00000604303 598 ntBASIC3.88□□□□□ -1.79
VPS28Q9UK41 AC110741.2-201ENST00000605278 268 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms