Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RPS3AP4-201ENST00000555161 764 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL845331.3-202ENST00000562856 261 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC233702.9-201ENST00000581528 203 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL451044.1-201ENST00000604867 238 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AP003117.2-201ENST00000606010 545 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 MIR8059-201ENST00000620427 81 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC091905.2-201ENST00000623143 306 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC091905.1-201ENST00000624400 311 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 LRRC77P-213ENST00000637727 880 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC009902.3-201ENST00000606235 2172 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC126323.6-202ENST00000568092 3511 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.9-201ENST00000362354 101 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNU6-989P-201ENST00000362756 107 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNU4-1-201ENST00000363925 141 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.256-201ENST00000364594 104 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNU1-63P-201ENST00000383902 164 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.450-201ENST00000384198 113 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 Y_RNA.493-201ENST00000384422 102 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 SNORA70E-201ENST00000384492 135 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNA5SP317-201ENST00000410176 116 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNA5SP311-201ENST00000411290 116 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC245052.5-201ENST00000416320 649 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 Z74021.1-201ENST00000423610 407 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC005517.2-201ENST00000424673 553 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 TIMM9P3-201ENST00000428659 274 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC073464.1-201ENST00000429823 534 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 MTCO2P11-201ENST00000431069 680 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 OR4C10P-201ENST00000434991 931 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 UBE2V1P13-201ENST00000436983 439 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RPS26P2-201ENST00000440331 348 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AL512326.1-201ENST00000443050 721 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RPL23AP41-201ENST00000484754 458 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RN7SL691P-201ENST00000494487 301 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC116353.2-201ENST00000505332 712 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC010587.1-201ENST00000505809 469 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ARL4AP2-201ENST00000507378 601 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC010342.1-201ENST00000514047 877 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNA5SP315-201ENST00000516340 116 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNA5SP312-201ENST00000517068 116 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 SETP2-201ENST00000553886 926 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 TVP23BP1-201ENST00000557500 617 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 MTCO3P24-201ENST00000572729 782 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AL591034.3-201ENST00000605511 685 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 MIR98-201ENST00000606724 119 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AL590282.1-201ENST00000610379 1136 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 RNA5SP196-201ENST00000625967 102 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 MIR3688-2-201ENST00000636963 87 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC244258.1-201ENST00000637553 1071 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 AP001273.1-201ENST00000624493 3152 ntBASIC4.53□□□□□ -1.68
TDP1Q9NUW8 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
TDP1Q9NUW8 LARP1BP1-201ENST00000506036 1359 ntBASIC4.53□□□□□ -1.69
TDP1Q9NUW8 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
TDP1Q9NUW8 Y_RNA.1-201ENST00000352915 104 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RNA5SP388-201ENST00000362584 119 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RNU1-94P-201ENST00000362627 173 ntBASIC4.52□□□□□ -1.69
TDP1Q9NUW8 RNU6-282P-201ENST00000365357 103 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 530.5 ms