Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR558-201ENST00000384920 94 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC068050.1-201ENST00000394891 380 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC114755.2-201ENST00000413520 361 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RPL21P111-201ENST00000418453 477 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC006466.1-201ENST00000438721 289 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC016691.1-201ENST00000441321 413 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC016696.1-201ENST00000446949 318 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC091685.2-201ENST00000454924 864 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AURKAPS2-201ENST00000454983 333 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC090686.1-201ENST00000481577 749 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RPS29P25-201ENST00000481709 171 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC108145.1-201ENST00000503770 153 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC018710.1-201ENST00000506509 158 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RNU6-1095P-201ENST00000516148 108 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 DEFB108D-201ENST00000527787 222 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 PHBP17-201ENST00000528576 541 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 SNORA74C-1-201ENST00000580726 201 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC090616.5-202ENST00000582111 297 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 MIR4480-201ENST00000582492 71 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RN7SL435P-201ENST00000584418 282 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 RNA5SP108-201ENST00000605921 117 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 FAM25E-202ENST00000608562 189 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 DISC2.1-201ENST00000612827 205 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 MIR6130-201ENST00000619419 109 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 AC015871.5-202ENST00000623252 701 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 SDAD1P1-202ENST00000524156 2051 ntBASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.82□□□□□ -1.64
TRIM39Q9HCM9 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNU4-48P-201ENST00000365559 182 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNU6-74P-201ENST00000384235 107 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNU6-1158P-201ENST00000391167 107 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNA5SP113-201ENST00000410486 84 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNU6-373P-201ENST00000411247 98 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC104333.2-201ENST00000422630 192 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL513185.2-201ENST00000425543 193 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC098614.3-201ENST00000438957 440 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 BTF3P6-201ENST00000448054 499 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC006480.1-201ENST00000449887 378 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL356981.1-201ENST00000454879 684 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 SNORD97-201ENST00000459187 142 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RPL35AP28-201ENST00000459730 331 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC063943.1-201ENST00000465434 453 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC083982.1-201ENST00000485679 344 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 HSPD1P15-201ENST00000505573 1122 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RNU4-60P-201ENST00000517239 135 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 HIF1AP1-201ENST00000553642 175 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 HMGB3P26-201ENST00000560051 582 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 OR4K8P-201ENST00000578842 1048 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MIR4737-201ENST00000583979 81 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 SNORD84-203ENST00000584275 78 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL031666.3-201ENST00000609320 1006 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AL136295.6-201ENST00000610486 658 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AC069234.5-201ENST00000611056 416 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 Mico1.1-201ENST00000611698 204 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MIR6715B-201ENST00000637172 77 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 Z73965.1-201ENST00000623412 2297 ntBASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.81□□□□□ -1.64
TRIM39Q9HCM9 AP000542.2-201ENST00000623199 6179 ntBASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.8□□□□□ -1.64
TRIM39Q9HCM9 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms