Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
UPF3BQ9BZI7 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 METTL21EP-201ENST00000298105 713 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AL356057.3-201ENST00000402607 340 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 RPL21P66-201ENST00000426566 466 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 RPS20P22-201ENST00000473700 357 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 HMGB1P22-201ENST00000505315 124 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC008565.1-201ENST00000509046 885 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC093770.1-201ENST00000511559 571 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 RN7SKP132-201ENST00000516001 208 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 RN7SKP96-201ENST00000516948 297 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC109635.4-202ENST00000531666 412 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 MTCO3P13-201ENST00000577757 781 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 MIR4635-201ENST00000583759 79 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 NTAN1P1-201ENST00000603150 646 ntBASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.19□□□□□ -1.9
UPF3BQ9BZI7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 RNU6-98P-201ENST00000384173 107 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 RNU6-1181P-201ENST00000384191 106 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 MTATP6P31-201ENST00000406985 692 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 YPEL5P1-201ENST00000419731 367 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 AL121578.1-201ENST00000428051 892 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 AC108938.1-201ENST00000451204 136 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 RPS24P6-201ENST00000452670 400 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 SYPL1P1-201ENST00000473622 768 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 RPS27AP9-201ENST00000477681 438 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 AC008277.2-201ENST00000605196 797 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.18□□□□□ -1.9
UPF3BQ9BZI7 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AL049780.3-201ENST00000624612 1583 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 MIR421-201ENST00000365696 85 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 RNA5SP210-201ENST00000391034 120 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 RNU4-65P-201ENST00000410473 140 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC087499.2-201ENST00000432861 149 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 RPL23AP31-201ENST00000456160 467 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 HMGB1P3-201ENST00000502802 616 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 RNU6-1073P-201ENST00000517182 106 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC100870.1-201ENST00000522035 505 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC104115.2-201ENST00000523026 687 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC004696.1-201ENST00000614345 607 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 AC092435.3-201ENST00000565538 3654 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 MTND5P28-201ENST00000438005 1594 ntBASIC3.17□□□□□ -1.9
UPF3BQ9BZI7 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 SFR1P1-201ENST00000403720 688 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AL513175.2-201ENST00000422071 443 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RFESDP1-201ENST00000422350 461 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 MYL8P-204ENST00000431574 518 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RPL7P29-201ENST00000437151 728 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 COX6CP2-201ENST00000444980 225 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RPL39P40-201ENST00000445481 146 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AL034418.1-201ENST00000448675 860 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 HMGN2P13-201ENST00000476476 274 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AC016065.2-201ENST00000514530 444 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RNU1-41P-201ENST00000516161 162 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RNU1-48P-201ENST00000516400 162 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 RNA5SP468-201ENST00000516782 93 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 OR4A45P-201ENST00000529954 901 ntBASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.16□□□□□ -1.9
UPF3BQ9BZI7 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms