Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 AC090079.2-201ENST00000575289 768 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC073657.2-201ENST00000605661 303 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AL353748.2-201ENST00000622148 471 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AP003485.1-201ENST00000625093 753 ntBASIC3.7□□□□□ -1.82
CCDC43Q96MW1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
CCDC43Q96MW1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 Y_RNA.25-201ENST00000362528 102 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNA5SP267-201ENST00000364893 126 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNU6-1257P-201ENST00000384625 110 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNA5SP44-201ENST00000410446 133 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 MTCO1P39-201ENST00000426148 480 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC011242.1-201ENST00000433596 1158 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC010625.1-201ENST00000511296 403 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC005476.1-201ENST00000554427 397 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 MIR4474-201ENST00000579189 78 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 COX6CP3-201ENST00000580869 223 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RPL23AP92-201ENST00000603609 255 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 VIS1.1-201ENST00000610517 203 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 uc_338.1-201ENST00000612113 180 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AC092628.2-201ENST00000622492 339 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AL138955.1-201ENST00000622881 1040 ntBASIC3.69□□□□□ -1.82
CCDC43Q96MW1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC43Q96MW1 RNU6-224P-201ENST00000384055 107 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 RNU2-42P-201ENST00000410697 113 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 RPL7P30-201ENST00000420888 709 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC006946.1-201ENST00000429106 328 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 HIGD1AP11-201ENST00000438361 280 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AL591503.2-201ENST00000442314 1005 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 USP9YP34-201ENST00000453983 808 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 ARPC3P2-201ENST00000457786 533 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC006518.1-201ENST00000541449 943 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 BNIP3P24-201ENST00000593398 557 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC009237.15-201ENST00000610252 501 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC005332.6-201ENST00000613178 446 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AL136164.4-201ENST00000625013 2135 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AP005901.5-201ENST00000545779 1796 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC43Q96MW1 AC002546.1-201ENST00000588041 2504 ntBASIC3.68□□□□□ -1.82
CCDC43Q96MW1 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC004972.1-201ENST00000623934 2209 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 SNORA38.1-201ENST00000364172 131 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 SKINT1L-201ENST00000401057 817 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 RNU2-47P-201ENST00000410649 186 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 RNA5SP107-201ENST00000411358 122 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 GTF2IP23-201ENST00000423746 351 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC005326.1-201ENST00000429197 123 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 GTF2IP7-202ENST00000436677 309 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 CST9LP2-201ENST00000437612 320 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 MTCYBP31-201ENST00000438855 1122 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL645638.1-201ENST00000440519 361 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 RFC5P1-201ENST00000454419 874 ntBASIC3.67□□□□□ -1.82
CCDC43Q96MW1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.67□□□□□ -1.82
CCDC43Q96MW1 PNPLA4P1-201ENST00000458328 305 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms