Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 HSFY7P-201ENST00000432672 318 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC011242.1-201ENST00000433596 1158 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 HSFY8P-201ENST00000437934 318 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 RAB9AP1-201ENST00000449393 573 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 HSFY5P-201ENST00000453726 309 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 RFC5P1-201ENST00000454419 874 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 RPL7P5-201ENST00000471472 736 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC104417.1-201ENST00000523974 751 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 FAM60DP-201ENST00000524174 632 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 OR10V3P-201ENST00000525712 725 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC005476.1-201ENST00000554427 397 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 DNAJC8P1-201ENST00000554535 372 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL022099.1-201ENST00000604551 712 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL109618.2-201ENST00000605527 211 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL139022.2-201ENST00000606934 443 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL138880.2-201ENST00000616214 239 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC231759.1-201ENST00000616455 597 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL356585.4-201ENST00000623078 1229 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 CR392039.5-201ENST00000623201 510 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AC127502.3-201ENST00000636170 1206 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 RNU6-1155P-201ENST00000363554 107 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 CD24P4-201ENST00000382840 243 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 MIR134-201ENST00000385258 73 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 RPL7P27-201ENST00000403775 720 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC245291.1-201ENST00000419501 328 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AL137014.1-201ENST00000420490 1226 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 USP9YP21-201ENST00000420603 432 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 ISCA1P2-201ENST00000438679 421 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC092393.1-201ENST00000439625 742 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 HMGB3P11-201ENST00000440127 604 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 Z82190.1-201ENST00000454534 490 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AL672167.3-201ENST00000465951 960 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 FTH1P2-201ENST00000466086 412 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 ST13P14-201ENST00000474095 734 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC025518.1-201ENST00000479856 347 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 RPL32P34-201ENST00000486380 400 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC093278.1-201ENST00000494700 600 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 DYNLL1P6-201ENST00000503440 264 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC023632.1-201ENST00000518463 375 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 TRMT10BP1-201ENST00000519377 943 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC104027.1-201ENST00000521887 300 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC044913.1-201ENST00000557200 430 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC015917.1-201ENST00000579654 510 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC069431.2-201ENST00000604149 1099 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC004832.5-201ENST00000608677 401 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 RNU6-1192P-201ENST00000612197 107 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 RNU6-489P-201ENST00000618289 107 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 SNORD39.4-201ENST00000620099 78 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AL356321.1-201ENST00000621360 228 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 AC039056.2-201ENST00000622261 511 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS39Q96JC1 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.35□□□□□ -1.87
VPS39Q96JC1 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VPS39Q96JC1 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VPS39Q96JC1 SNORD17-201ENST00000390930 237 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 AC122718.1-201ENST00000439448 744 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.34□□□□□ -1.87
VPS39Q96JC1 RBMY2UP-201ENST00000453474 324 ntBASIC3.34□□□□□ -1.87
VPS39Q96JC1 FAM133DP-201ENST00000464802 691 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms