Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 HNRNPCP4-201ENST00000571636 900 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 MIR5186-201ENST00000577504 120 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC005498.1-201ENST00000592125 465 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 VN1R84P-201ENST00000593697 235 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 MIR8069-1-201ENST00000616627 86 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 MIR8069-2-201ENST00000621412 86 ntBASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USHBP1Q8N6Y0 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL606537.1-201ENST00000607258 2011 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL590004.1-201ENST00000405321 300 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 RNA5SP118-201ENST00000410385 109 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 BTF3L4P3-201ENST00000418879 476 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC133104.1-201ENST00000429100 218 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 MTND1P12-201ENST00000455231 147 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 RN7SL817P-201ENST00000480777 288 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC023194.1-201ENST00000493084 308 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC114967.1-201ENST00000504890 259 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 Y_RNA.672-201ENST00000516289 104 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 RNA5SP360-201ENST00000516555 118 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC006064.5-201ENST00000541782 248 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AL358913.1-201ENST00000554342 121 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC011712.1-201ENST00000588959 234 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC013553.2-201ENST00000604244 589 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC093788.1-201ENST00000609356 927 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 AC006504.8-201ENST00000621046 635 ntBASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.57□□□□□ -1.52
USHBP1Q8N6Y0 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-289P-201ENST00000364093 107 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-1322P-201ENST00000364309 107 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-657P-201ENST00000383904 107 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-1227P-201ENST00000383981 107 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-908P-201ENST00000410160 94 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RN7SKP159-201ENST00000410657 292 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AL445669.1-201ENST00000426743 755 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 DYNLL1P7-201ENST00000429273 258 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RPL31P35-201ENST00000431058 377 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 TBCAP1-201ENST00000436520 327 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNA5SP246-201ENST00000458909 119 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RPS20P20-201ENST00000460498 340 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RPL36AP51-201ENST00000487216 318 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RPL39P36-201ENST00000490784 156 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 AC010486.1-201ENST00000511793 424 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 RNU6-445P-201ENST00000516949 107 ntBASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.56□□□□□ -1.52
USHBP1Q8N6Y0 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms