Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 Y_RNA.1-201ENST00000352915 104 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RNA5SP167-201ENST00000365461 116 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RN7SKP269-201ENST00000365545 319 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 MTCO3P40-201ENST00000392516 676 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC097374.1-203ENST00000400783 485 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 MIR1282-201ENST00000408865 101 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RNA5SP306-201ENST00000411087 107 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RPL21P24-201ENST00000413752 448 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 BMS1P17-202ENST00000416720 316 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 DUTP6-201ENST00000425573 462 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 CNOT7P2-201ENST00000441051 832 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AL662791.1-201ENST00000441992 928 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 MTCO3P45-201ENST00000443036 613 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC105399.1-202ENST00000447303 205 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC008481.1-201ENST00000463278 396 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC007537.2-201ENST00000472093 511 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC023598.1-201ENST00000472521 361 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AP000926.1-201ENST00000479573 241 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 RN7SL441P-201ENST00000492388 296 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC008897.1-201ENST00000494006 347 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 VN1R104P-201ENST00000505115 1009 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC005921.1-201ENST00000510589 286 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 MTND4LP26-201ENST00000518144 282 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC022404.1-201ENST00000555320 273 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 SUB1P2-201ENST00000556401 297 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC006270.2-201ENST00000578523 652 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 MIR4293-201ENST00000584305 78 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC012443.1-201ENST00000605605 231 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AF250324.2-201ENST00000608299 610 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC004067.1-201ENST00000608733 700 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AL359880.1-201ENST00000621879 266 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AL160394.1-201ENST00000624765 724 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC112200.1-201ENST00000625015 234 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 AC139713.2-214ENST00000642059 1811 ntBASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC28AQ8IWP9 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC009812.4-201ENST00000569134 1805 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 TMSB4XP4-201ENST00000323496 618 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 HSPE1P11-201ENST00000339579 310 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 SNORD56.2-201ENST00000363242 71 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-511P-201ENST00000363496 107 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RNA5SP189-201ENST00000364920 115 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 SNORA23-201ENST00000365128 182 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RNA5SP22-201ENST00000365393 109 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RNU6-108P-201ENST00000365558 107 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 MIR607-201ENST00000385241 96 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RPL35AP24-201ENST00000413846 330 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 MTATP6P4-201ENST00000427725 675 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 GPR143P-201ENST00000434155 205 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC024082.2-201ENST00000434771 238 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC019185.1-201ENST00000442718 389 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC104651.2-201ENST00000447549 528 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC140076.1-201ENST00000449897 361 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 OR52E7P-201ENST00000452394 933 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RPS3AP14-201ENST00000483907 780 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 RPL35P6-201ENST00000490024 372 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC079382.1-201ENST00000493346 557 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC004062.1-201ENST00000509926 645 ntBASIC3.94□□□□□ -1.78
CCDC28AQ8IWP9 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms