Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 MORF4L1P4-201ENST00000450245 976 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 SNRPGP6-201ENST00000451124 220 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 ATG12P2-201ENST00000456830 416 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 MTCYBP14-201ENST00000457471 715 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 CABYRP1-201ENST00000465493 1045 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 SRI-210ENST00000490437 570 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 RNU7-193P-201ENST00000516723 65 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC009812.2-201ENST00000517657 457 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 COX6CP5-201ENST00000527162 228 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AP000867.2-201ENST00000532468 320 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 ERP27-202ENST00000540097 993 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC023824.2-201ENST00000566185 400 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 MIR4489-201ENST00000578869 62 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 MIR4480-201ENST00000582492 71 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC055764.2-201ENST00000610089 670 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 MIR1291-201ENST00000627649 87 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.34□□□□□ -2.19
LINC00643Q86TS7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
LINC00643Q86TS7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
LINC00643Q86TS7 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 MIR372-201ENST00000362225 67 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 SNORA48.3-201ENST00000391081 134 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC234782.4-201ENST00000417646 1048 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC016712.1-201ENST00000431088 378 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 RPL21P133-201ENST00000443666 476 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 HSFY6P-201ENST00000445573 403 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 ANKRD26P4-201ENST00000455755 950 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC026436.1-201ENST00000510537 270 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC034244.2-201ENST00000514668 858 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC008885.1-201ENST00000514930 301 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 HMGN1P28-201ENST00000521340 364 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 MIR3939-201ENST00000582614 106 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC009303.3-201ENST00000591103 736 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AL450472.3-201ENST00000615578 367 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC109809.1-201ENST00000619665 545 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 MIR7703-201ENST00000620784 77 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AP000346.3-201ENST00000622821 210 ntBASIC1.33□□□□□ -2.2
LINC00643Q86TS7 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC1.33□□□□□ -2.2
LINC00643Q86TS7 AC016717.2-201ENST00000609089 5141 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AL121657.1-201ENST00000327215 531 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 RNU6-525P-201ENST00000363685 104 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 KRR1P1-201ENST00000419430 803 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 RPS15AP28-201ENST00000435088 386 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 MTCYBP45-201ENST00000435243 565 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 IFNA20P-201ENST00000436840 528 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 MTCYBP34-201ENST00000439552 670 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC114755.5-201ENST00000447760 831 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 RPL31P41-201ENST00000477967 372 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 MRPS17P9-201ENST00000511924 393 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 ATG10-208ENST00000513634 618 ntTSL 2 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AP003102.1-201ENST00000525638 661 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 CASP1P1-201ENST00000526345 212 ntBASIC1.32□□□□□ -2.2
LINC00643Q86TS7 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC1.32□□□□□ -2.2
LINC00643Q86TS7 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms