Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RPL23AP69-201ENST00000431134 458 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 NRBF2P3-201ENST00000432731 865 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC092162.1-201ENST00000432828 434 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 CYCSP6-201ENST00000434498 302 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RPL12P18-201ENST00000437175 325 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 Z98949.2-201ENST00000440996 144 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RPS15AP27-201ENST00000449183 343 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 snoU109.4-201ENST00000458953 143 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 SCARNA18-201ENST00000459004 134 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 U8.20-201ENST00000459445 131 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC116533.1-201ENST00000459748 321 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RPL21P93-201ENST00000480465 489 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC010350.1-201ENST00000504908 231 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC116337.1-201ENST00000509680 687 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-941P-201ENST00000516346 108 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC105031.1-201ENST00000518550 476 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 HMGB1P40-201ENST00000525121 540 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RPL10P14-201ENST00000565265 298 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC106782.4-201ENST00000568264 210 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 RN7SL290P-201ENST00000578661 300 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC011445.2-201ENST00000599274 173 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC006363.1-201ENST00000603806 463 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL162431.4-201ENST00000604674 411 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL451044.1-201ENST00000604867 238 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL022394.1-201ENST00000606979 292 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 PISRT1.1-201ENST00000616930 107 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL049767.1-202ENST00000637826 242 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL034549.2-201ENST00000618285 3373 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AP001029.2-203ENST00000589795 4910 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 AL360270.2-201ENST00000562952 5985 ntBASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
UBE3DQ7Z6J8 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 XIAPP3-201ENST00000312918 795 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-562P-201ENST00000362731 107 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RN7SKP160-201ENST00000363804 340 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.364-201ENST00000365532 101 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNU1-74P-201ENST00000384108 171 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 SNORA5.1-201ENST00000384275 131 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.476-201ENST00000384347 108 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 Y_RNA.557-201ENST00000384680 107 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 MIR450B-201ENST00000401182 78 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 OR3A2-201ENST00000408891 1076 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNA5SP487-201ENST00000410186 122 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNU2-50P-201ENST00000410494 143 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RNU6-603P-201ENST00000411403 107 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC114491.1-201ENST00000416095 246 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 RPL7P28-201ENST00000437739 740 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC128713.1-201ENST00000471495 306 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AP000797.2-201ENST00000475768 606 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC135721.1-201ENST00000497954 479 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC006499.3-201ENST00000506077 748 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AP000676.2-201ENST00000529711 301 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC009852.2-201ENST00000567898 485 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC005014.2-201ENST00000607795 599 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 U2.17-201ENST00000611454 95 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 AC138965.3-201ENST00000623875 498 ntBASIC5.06□□□□□ -1.6
UBE3DQ7Z6J8 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 199.8 ms