Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC091179.1-201ENST00000461606 579 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.88□□□□□ -1.95
USP54Q70EL1 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.88□□□□□ -1.95
USP54Q70EL1 AC123786.2-201ENST00000603459 275 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 AC073348.1-201ENST00000623002 331 ntBASIC2.88□□□□□ -1.95
USP54Q70EL1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP54Q70EL1 AC080128.1-201ENST00000474389 1917 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
USP54Q70EL1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP54Q70EL1 U8.9-201ENST00000365667 134 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.87□□□□□ -1.95
USP54Q70EL1 TRBV26-201ENST00000456572 344 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.87□□□□□ -1.95
USP54Q70EL1 AC010200.2-201ENST00000605098 235 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 AP004247.3-201ENST00000608682 624 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.87□□□□□ -1.95
USP54Q70EL1 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.87□□□□□ -1.95
USP54Q70EL1 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
USP54Q70EL1 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP54Q70EL1 RNA5SP105-201ENST00000391123 113 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 RNA5SP344-201ENST00000411081 104 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 SAR1AP4-201ENST00000429225 591 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 NFU1-207ENST00000462320 558 ntTSL 4 BASIC2.86□□□□□ -1.95
USP54Q70EL1 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.86□□□□□ -1.95
USP54Q70EL1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.86□□□□□ -1.95
USP54Q70EL1 NF1P5-201ENST00000588287 448 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 AC013562.2-201ENST00000611632 603 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 AC009318.3-201ENST00000616916 503 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.86□□□□□ -1.95
USP54Q70EL1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.86□□□□□ -1.95
USP54Q70EL1 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.86□□□□□ -1.95
USP54Q70EL1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
USP54Q70EL1 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 MTND5P28-201ENST00000438005 1594 ntBASIC2.86□□□□□ -1.95
USP54Q70EL1 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP54Q70EL1 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.85□□□□□ -1.95
USP54Q70EL1 MTND2P2-201ENST00000434633 945 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 YWHAZP7-201ENST00000436906 631 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.85□□□□□ -1.95
USP54Q70EL1 HMGB1P48-201ENST00000446155 598 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 AL645939.1-201ENST00000453429 797 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 TRBV8-1-201ENST00000481590 279 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.85□□□□□ -1.95
USP54Q70EL1 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.85□□□□□ -1.95
USP54Q70EL1 MIR4512-201ENST00000583257 77 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 MIR6132-201ENST00000622083 109 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 SNORA11.4-201ENST00000408823 129 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.85□□□□□ -1.95
USP54Q70EL1 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.85□□□□□ -1.95
USP54Q70EL1 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.85□□□□□ -1.95
USP54Q70EL1 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.85□□□□□ -1.95
USP54Q70EL1 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.85□□□□□ -1.95
USP54Q70EL1 AC091488.1-201ENST00000604239 660 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
USP54Q70EL1 AC096586.2-201ENST00000610260 441 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 MTND5P29-201ENST00000458676 1807 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 AC011460.1-201ENST00000636268 1834 ntBASIC2.85□□□□□ -1.95
USP54Q70EL1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
USP54Q70EL1 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP54Q70EL1 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
USP54Q70EL1 RNU1-17P-201ENST00000363022 152 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 NPM1P10-201ENST00000398310 865 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP54Q70EL1 IGHV3-76-201ENST00000522465 295 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.84□□□□□ -1.95
USP54Q70EL1 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.84□□□□□ -1.95
USP54Q70EL1 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.84□□□□□ -1.95
USP54Q70EL1 AL022099.1-201ENST00000604551 712 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 GMCL1P2-201ENST00000605230 823 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 AL137847.3-201ENST00000611521 109 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 AC245517.5-201ENST00000611529 162 ntBASIC2.84□□□□□ -1.95
USP54Q70EL1 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC2.84□□□□□ -1.95
USP54Q70EL1 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC2.84□□□□□ -1.96
USP54Q70EL1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.84□□□□□ -1.96
USP54Q70EL1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
USP54Q70EL1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
USP54Q70EL1 AC011155.1-201ENST00000316512 456 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP54Q70EL1 RNA5SP213-201ENST00000391031 106 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 VN1R31P-201ENST00000417498 730 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 Z82205.1-201ENST00000428456 297 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AP000705.1-201ENST00000454567 350 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 TRAV31-201ENST00000502780 342 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.83□□□□□ -1.96
USP54Q70EL1 RNU6-295P-201ENST00000516901 104 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 AC068339.2-201ENST00000534395 618 ntBASIC2.83□□□□□ -1.96
USP54Q70EL1 MIR5002-201ENST00000584713 97 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms