Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 AP001642.1-201ENST00000624727 2117 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 NXPH1-205ENST00000602349 1953 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 FRG1BP-201ENST00000278882 761 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 FRG1CP-201ENST00000358464 769 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 Y_RNA.58-201ENST00000362807 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 Y_RNA.154-201ENST00000363624 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 RNY3P1-201ENST00000365085 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 RNU6-282P-201ENST00000365357 103 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 RNY3-201ENST00000365484 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 Y_RNA.419-201ENST00000384041 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 Y_RNA.490-201ENST00000384413 102 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 RNU6-373P-201ENST00000411247 98 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 MRPL48P1-201ENST00000445390 636 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AL500522.2-201ENST00000448562 343 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 AL121877.1-201ENST00000453704 622 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 HMGN3P1-201ENST00000453847 193 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 RNU7-136P-201ENST00000458819 69 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 RPL35AP15-201ENST00000468042 339 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.39□□□□□ -1.71
COL4A3Q01955 RNU6-1045P-201ENST00000516321 107 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 PHBP17-201ENST00000528576 541 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AC011611.1-201ENST00000552179 197 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 AC087499.8-201ENST00000578406 226 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
COL4A3Q01955 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 CCT4P2-201ENST00000233836 1548 ntBASIC4.39□□□□□ -1.71
COL4A3Q01955 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
COL4A3Q01955 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
COL4A3Q01955 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
COL4A3Q01955 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 OR52B1P-201ENST00000316506 909 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 RNU6-657P-201ENST00000383904 107 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AL356432.1-201ENST00000405809 419 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 MTCO2P5-201ENST00000422621 426 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AC022022.1-201ENST00000430304 178 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AL133547.1-201ENST00000448546 220 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AL592156.1-201ENST00000508758 304 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNU6-513P-201ENST00000516104 104 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNU6-327P-201ENST00000516270 127 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 Vault.3-201ENST00000516676 95 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNA5SP73-201ENST00000516744 108 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 RNU6-352P-201ENST00000516908 107 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 COX6CP4-201ENST00000605798 228 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 AC099669.2-201ENST00000616549 437 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 AL357559.1-201ENST00000622228 274 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 CR392039.5-201ENST00000623201 510 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.38□□□□□ -1.71
COL4A3Q01955 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
COL4A3Q01955 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 ERCC6-202ENST00000374127 1782 ntBASIC4.38□□□□□ -1.71
COL4A3Q01955 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL4A3Q01955 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.38□□□□□ -1.71
COL4A3Q01955 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms