Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.42□□□□□ -1.86
PTPN4P29074 UBE2NP1-201ENST00000545592 458 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.42□□□□□ -1.86
PTPN4P29074 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.42□□□□□ -1.86
PTPN4P29074 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.42□□□□□ -1.86
PTPN4P29074 MIR5195-201ENST00000583555 115 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 BNIP3P40-201ENST00000596017 556 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 RPL23AP92-201ENST00000603609 255 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.42□□□□□ -1.86
PTPN4P29074 AC092954.1-201ENST00000609121 445 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AC231759.1-201ENST00000616455 597 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AC069209.1-201ENST00000619282 651 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AL590240.3-201ENST00000621416 943 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 AC073476.4-201ENST00000628409 72 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN4P29074 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
PTPN4P29074 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN4P29074 AC021755.1-201ENST00000559747 1447 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN4P29074 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
PTPN4P29074 AC244517.1-201ENST00000606030 2086 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 AC005183.1-201ENST00000603687 1979 ntBASIC3.42□□□□□ -1.86
PTPN4P29074 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN4P29074 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN4P29074 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 SNORA51.6-201ENST00000384151 125 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 RNU2-28P-201ENST00000410457 189 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 FNDC3CP-201ENST00000420795 1155 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AL158156.1-201ENST00000422509 473 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 AL035410.1-201ENST00000427409 427 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC097713.2-201ENST00000430199 356 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 SEPT7P5-201ENST00000434048 306 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 PTGES3P5-201ENST00000455109 434 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC092185.1-201ENST00000491371 97 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 RPL21P131-201ENST00000497298 483 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC093767.1-201ENST00000504523 156 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 AC026427.2-201ENST00000506228 536 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 SNORA74D-201ENST00000516404 141 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC107934.2-201ENST00000518653 310 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.41□□□□□ -1.86
PTPN4P29074 AC021749.1-201ENST00000604322 607 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 AP000240.1-201ENST00000609910 452 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC006329.2-201ENST00000611491 394 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC005332.6-201ENST00000613178 446 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC008083.4-201ENST00000615076 444 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 CYCSP41-201ENST00000616920 296 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC123767.1-202ENST00000620407 817 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 OR4G3P-201ENST00000633500 913 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.41□□□□□ -1.86
PTPN4P29074 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
PTPN4P29074 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.41□□□□□ -1.86
PTPN4P29074 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN4P29074 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN4P29074 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
PTPN4P29074 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.41□□□□□ -1.86
PTPN4P29074 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN4P29074 Y_RNA.25-201ENST00000362528 102 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 RNU6-989P-201ENST00000362756 107 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 RNA5SP267-201ENST00000364893 126 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 MIR490-201ENST00000384865 128 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AL356968.1-201ENST00000416622 474 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.4□□□□□ -1.87
PTPN4P29074 AL449283.1-202ENST00000418249 604 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
PTPN4P29074 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC009969.1-201ENST00000438726 172 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC004854.1-201ENST00000440356 349 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 MTCYBP11-201ENST00000447254 1109 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.4□□□□□ -1.87
PTPN4P29074 RPL23AP67-201ENST00000465341 474 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 RPS23P3-201ENST00000470993 430 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC113347.3-201ENST00000509113 148 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC105914.1-201ENST00000511798 226 ntBASIC3.4□□□□□ -1.87
PTPN4P29074 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.4□□□□□ -1.87
PTPN4P29074 AC007458.1-201ENST00000542812 373 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms