Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OR7E13P-201ENST00000526052 910 ntBASIC4.04□□□□□ -1.76
BDNFP23560 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC4.04□□□□□ -1.76
BDNFP23560 CYCSP2-201ENST00000558168 301 ntBASIC4.04□□□□□ -1.76
BDNFP23560 RPL23AP84-201ENST00000571193 464 ntBASIC4.04□□□□□ -1.76
BDNFP23560 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC4.04□□□□□ -1.76
BDNFP23560 MIR3908-201ENST00000579798 126 ntBASIC4.04□□□□□ -1.76
BDNFP23560 AC022662.1-201ENST00000580252 331 ntBASIC4.04□□□□□ -1.76
BDNFP23560 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.04□□□□□ -1.76
BDNFP23560 AL160237.3-201ENST00000604114 1013 ntBASIC4.04□□□□□ -1.76
BDNFP23560 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.04□□□□□ -1.76
BDNFP23560 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
BDNFP23560 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.04□□□□□ -1.76
BDNFP23560 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
BDNFP23560 AL079305.1-201ENST00000623159 3008 ntBASIC4.04□□□□□ -1.76
BDNFP23560 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
BDNFP23560 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
BDNFP23560 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 MIR423-201ENST00000362201 94 ntBASIC4.03□□□□□ -1.76
BDNFP23560 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
BDNFP23560 RNU6-1197P-201ENST00000391183 107 ntBASIC4.03□□□□□ -1.76
BDNFP23560 PTMAP2-201ENST00000397627 327 ntBASIC4.03□□□□□ -1.76
BDNFP23560 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 RNU4-22P-201ENST00000411058 166 ntBASIC4.03□□□□□ -1.76
BDNFP23560 TPMTP3-201ENST00000411928 735 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RAB9AP3-201ENST00000412737 573 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 BX842559.1-201ENST00000419615 532 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AL953862.1-201ENST00000423016 168 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 AC096638.2-201ENST00000434965 711 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 TXNP1-201ENST00000441872 371 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AL133547.1-201ENST00000448546 220 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RAB9AP1-201ENST00000449393 573 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 AC092155.2-201ENST00000454675 477 ntBASIC4.03□□□□□ -1.76
BDNFP23560 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RPL31P50-201ENST00000471002 296 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RPL21P129-201ENST00000491732 478 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RPL30P5-201ENST00000494923 336 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC116353.3-201ENST00000511215 249 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC024589.1-201ENST00000512207 263 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC010374.2-201ENST00000512933 535 ntBASIC4.03□□□□□ -1.76
BDNFP23560 RNU6-150P-201ENST00000516237 95 ntBASIC4.03□□□□□ -1.76
BDNFP23560 TRMT10BP1-201ENST00000519377 943 ntBASIC4.03□□□□□ -1.76
BDNFP23560 COX6CP8-201ENST00000522620 226 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.03□□□□□ -1.76
BDNFP23560 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.03□□□□□ -1.76
BDNFP23560 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.03□□□□□ -1.76
BDNFP23560 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.03□□□□□ -1.76
BDNFP23560 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.03□□□□□ -1.76
BDNFP23560 AP001429.1-201ENST00000602568 530 ntBASIC4.03□□□□□ -1.76
BDNFP23560 HMGB1P50-201ENST00000605814 607 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AL158211.4-201ENST00000606988 584 ntBASIC4.03□□□□□ -1.76
BDNFP23560 AC131235.4-201ENST00000609288 620 ntBASIC4.03□□□□□ -1.76
BDNFP23560 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
BDNFP23560 AC012442.3-202ENST00000636742 206 ntBASIC4.03□□□□□ -1.76
BDNFP23560 MTND5P24-201ENST00000438892 1767 ntBASIC4.03□□□□□ -1.76
BDNFP23560 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
BDNFP23560 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.77
BDNFP23560 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 AC018555.1-201ENST00000567548 1980 ntBASIC4.02□□□□□ -1.77
BDNFP23560 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
BDNFP23560 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
BDNFP23560 RNU6-76P-201ENST00000384060 104 ntBASIC4.02□□□□□ -1.77
BDNFP23560 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
BDNFP23560 SNORA48.8-201ENST00000391324 134 ntBASIC4.02□□□□□ -1.77
BDNFP23560 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 JKAMPP1-201ENST00000413804 919 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC106883.1-201ENST00000418805 562 ntBASIC4.02□□□□□ -1.77
BDNFP23560 HSPE1P1-201ENST00000421494 318 ntBASIC4.02□□□□□ -1.77
BDNFP23560 RPL7L1P10-201ENST00000427790 463 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC011742.1-201ENST00000431448 434 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AC104308.1-201ENST00000454621 333 ntBASIC4.02□□□□□ -1.77
BDNFP23560 BX322784.1-201ENST00000455793 1077 ntBASIC4.02□□□□□ -1.77
BDNFP23560 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.02□□□□□ -1.77
BDNFP23560 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.02□□□□□ -1.77
BDNFP23560 SNORD121B-201ENST00000458838 81 ntBASIC4.02□□□□□ -1.77
BDNFP23560 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.02□□□□□ -1.77
BDNFP23560 RNA5SP164-201ENST00000516533 110 ntBASIC4.02□□□□□ -1.77
BDNFP23560 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.02□□□□□ -1.77
BDNFP23560 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms