Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 MIR1322-201ENST00000638013 71 ntBASIC3.12□□□□□ -1.91
SDC1P18827 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
SDC1P18827 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.12□□□□□ -1.91
SDC1P18827 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
SDC1P18827 AF127577.6-201ENST00000623352 2191 ntBASIC3.11□□□□□ -1.91
SDC1P18827 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SDC1P18827 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
SDC1P18827 SNORA7.2-201ENST00000364446 145 ntBASIC3.11□□□□□ -1.91
SDC1P18827 U3.11-201ENST00000364476 212 ntBASIC3.11□□□□□ -1.91
SDC1P18827 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 BX323014.1-201ENST00000412876 237 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC1P18827 RPS29P4-201ENST00000414733 161 ntBASIC3.11□□□□□ -1.91
SDC1P18827 HSFY4P-201ENST00000415994 1181 ntBASIC3.11□□□□□ -1.91
SDC1P18827 RPL36AP36-201ENST00000418616 301 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.11□□□□□ -1.91
SDC1P18827 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 USP9YP34-201ENST00000453983 808 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AC026410.2-201ENST00000460281 156 ntBASIC3.11□□□□□ -1.91
SDC1P18827 HMGB1P25-201ENST00000468402 607 ntBASIC3.11□□□□□ -1.91
SDC1P18827 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SDC1P18827 RPL23AP55-201ENST00000498163 452 ntBASIC3.11□□□□□ -1.91
SDC1P18827 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC1P18827 MTCYBP17-201ENST00000503579 789 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC1P18827 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.11□□□□□ -1.91
SDC1P18827 TXNP6-201ENST00000510190 310 ntBASIC3.11□□□□□ -1.91
SDC1P18827 RNU6-27P-201ENST00000516146 107 ntBASIC3.11□□□□□ -1.91
SDC1P18827 RNY4P37-201ENST00000516225 96 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.11□□□□□ -1.91
SDC1P18827 OR5D17P-201ENST00000531492 978 ntBASIC3.11□□□□□ -1.91
SDC1P18827 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.11□□□□□ -1.91
SDC1P18827 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.11□□□□□ -1.91
SDC1P18827 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.11□□□□□ -1.91
SDC1P18827 MIR4276-201ENST00000584832 70 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AC093227.2-201ENST00000589357 285 ntBASIC3.11□□□□□ -1.91
SDC1P18827 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.11□□□□□ -1.91
SDC1P18827 BNIP3P24-201ENST00000593398 557 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AL450336.1-201ENST00000605180 586 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AL451074.6-201ENST00000608512 729 ntBASIC3.11□□□□□ -1.91
SDC1P18827 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.11□□□□□ -1.91
SDC1P18827 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.11□□□□□ -1.91
SDC1P18827 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC1P18827 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.11□□□□□ -1.91
SDC1P18827 AP001148.1-201ENST00000624124 2359 ntBASIC3.11□□□□□ -1.91
SDC1P18827 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.11□□□□□ -1.91
SDC1P18827 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SDC1P18827 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SDC1P18827 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SDC1P18827 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SDC1P18827 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SDC1P18827 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
SDC1P18827 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
SDC1P18827 RNU6-1249P-201ENST00000363237 111 ntBASIC3.1□□□□□ -1.91
SDC1P18827 MIR607-201ENST00000385241 96 ntBASIC3.1□□□□□ -1.91
SDC1P18827 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SDC1P18827 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SDC1P18827 SSR1P2-201ENST00000415208 787 ntBASIC3.1□□□□□ -1.91
SDC1P18827 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC091286.1-201ENST00000431233 461 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.1□□□□□ -1.91
SDC1P18827 PTENP1-201ENST00000447117 1215 ntBASIC3.1□□□□□ -1.91
SDC1P18827 RPL18AP17-201ENST00000455326 198 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC021146.5-201ENST00000503544 545 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC114967.1-201ENST00000504890 259 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC026412.2-201ENST00000512270 1075 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.1□□□□□ -1.91
SDC1P18827 RNA5SP217-201ENST00000515959 91 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.1□□□□□ -1.91
SDC1P18827 AC007458.1-201ENST00000542812 373 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 UBE2NP1-201ENST00000545592 458 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.1□□□□□ -1.91
SDC1P18827 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC1P18827 AGGF1P5-201ENST00000567900 919 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC1P18827 MIR5186-201ENST00000577504 120 ntBASIC3.1□□□□□ -1.91
SDC1P18827 MIR4637-201ENST00000582405 84 ntBASIC3.1□□□□□ -1.91
SDC1P18827 MAGOH2P-202ENST00000584384 429 ntBASIC3.1□□□□□ -1.91
SDC1P18827 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.1□□□□□ -1.91
SDC1P18827 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.1□□□□□ -1.91
SDC1P18827 XIAPP1-201ENST00000603162 600 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC103881.1-201ENST00000603476 538 ntBASIC3.1□□□□□ -1.91
SDC1P18827 DUXAP3-201ENST00000603616 594 ntBASIC3.1□□□□□ -1.91
SDC1P18827 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.1□□□□□ -1.91
SDC1P18827 AL162713.1-201ENST00000604480 262 ntBASIC3.1□□□□□ -1.91
SDC1P18827 AC131235.4-201ENST00000609288 620 ntBASIC3.1□□□□□ -1.91
SDC1P18827 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms