Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC110760.3-202ENST00000515177 371 ntBASIC3.55□□□□□ -1.84
VIMP08670 RNU6-150P-201ENST00000516237 95 ntBASIC3.55□□□□□ -1.84
VIMP08670 RNU6-579P-201ENST00000516879 102 ntBASIC3.55□□□□□ -1.84
VIMP08670 MIR2116-201ENST00000517221 80 ntBASIC3.55□□□□□ -1.84
VIMP08670 MTCO2P15-201ENST00000532655 656 ntBASIC3.55□□□□□ -1.84
VIMP08670 SNRPGP16-201ENST00000533275 226 ntBASIC3.55□□□□□ -1.84
VIMP08670 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.55□□□□□ -1.84
VIMP08670 CR383656.7-201ENST00000548164 174 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC084824.1-201ENST00000550917 1005 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 AC023575.1-201ENST00000580510 358 ntBASIC3.55□□□□□ -1.84
VIMP08670 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.55□□□□□ -1.84
VIMP08670 AL606490.9-201ENST00000603331 271 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC004987.4-201ENST00000603383 338 ntBASIC3.55□□□□□ -1.84
VIMP08670 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.55□□□□□ -1.84
VIMP08670 AL158042.1-201ENST00000605338 460 ntBASIC3.55□□□□□ -1.84
VIMP08670 AL390208.1-201ENST00000605885 644 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC092106.3-201ENST00000611308 722 ntBASIC3.55□□□□□ -1.84
VIMP08670 MIR6716-201ENST00000613413 80 ntBASIC3.55□□□□□ -1.84
VIMP08670 AC112484.5-201ENST00000624189 228 ntBASIC3.55□□□□□ -1.84
VIMP08670 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.55□□□□□ -1.84
VIMP08670 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VIMP08670 AC002546.1-201ENST00000588041 2504 ntBASIC3.55□□□□□ -1.84
VIMP08670 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 AC007823.1-201ENST00000569932 1566 ntBASIC3.55□□□□□ -1.84
VIMP08670 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VIMP08670 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VIMP08670 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.54□□□□□ -1.84
VIMP08670 AC005539.1-201ENST00000443768 1479 ntBASIC3.54□□□□□ -1.84
VIMP08670 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 MIR148B-201ENST00000362252 99 ntBASIC3.54□□□□□ -1.84
VIMP08670 RNU6-1155P-201ENST00000363554 107 ntBASIC3.54□□□□□ -1.84
VIMP08670 DEFB109C-201ENST00000382575 264 ntBASIC3.54□□□□□ -1.84
VIMP08670 DEFB109B-201ENST00000382656 264 ntBASIC3.54□□□□□ -1.84
VIMP08670 SNORA70C-201ENST00000384538 135 ntBASIC3.54□□□□□ -1.84
VIMP08670 ANAPC10P1-201ENST00000395991 556 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL022722.2-201ENST00000402519 180 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL356131.1-201ENST00000405826 414 ntBASIC3.54□□□□□ -1.84
VIMP08670 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 NDUFB4P5-201ENST00000415445 361 ntBASIC3.54□□□□□ -1.84
VIMP08670 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.54□□□□□ -1.84
VIMP08670 OR1AA1P-201ENST00000419597 916 ntBASIC3.54□□□□□ -1.84
VIMP08670 MTCO2P5-201ENST00000422621 426 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.54□□□□□ -1.84
VIMP08670 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.54□□□□□ -1.84
VIMP08670 AL359073.1-201ENST00000448036 403 ntBASIC3.54□□□□□ -1.84
VIMP08670 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.54□□□□□ -1.84
VIMP08670 KCTD9P5-201ENST00000504141 1170 ntBASIC3.54□□□□□ -1.84
VIMP08670 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 AC104090.1-201ENST00000506341 1171 ntBASIC3.54□□□□□ -1.84
VIMP08670 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.54□□□□□ -1.84
VIMP08670 POU5F1P7-201ENST00000508759 541 ntBASIC3.54□□□□□ -1.84
VIMP08670 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.54□□□□□ -1.84
VIMP08670 AC104027.1-201ENST00000521887 300 ntBASIC3.54□□□□□ -1.84
VIMP08670 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VIMP08670 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.54□□□□□ -1.84
VIMP08670 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.54□□□□□ -1.84
VIMP08670 FAM60BP-201ENST00000578364 658 ntBASIC3.54□□□□□ -1.84
VIMP08670 MIR4443-201ENST00000585052 53 ntBASIC3.54□□□□□ -1.84
VIMP08670 MIR3138-201ENST00000585238 82 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL133393.1-201ENST00000603277 287 ntBASIC3.54□□□□□ -1.84
VIMP08670 AP001330.4-201ENST00000604350 154 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL391497.1-201ENST00000608671 547 ntBASIC3.54□□□□□ -1.84
VIMP08670 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.54□□□□□ -1.84
VIMP08670 AL355810.1-201ENST00000614629 552 ntBASIC3.54□□□□□ -1.84
VIMP08670 AL445567.2-201ENST00000618935 498 ntBASIC3.54□□□□□ -1.84
VIMP08670 AP000484.1-201ENST00000620067 1252 ntBASIC3.54□□□□□ -1.84
VIMP08670 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VIMP08670 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.54□□□□□ -1.84
VIMP08670 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VIMP08670 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.53□□□□□ -1.84
VIMP08670 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
VIMP08670 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.53□□□□□ -1.84
VIMP08670 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VIMP08670 OR5H2-201ENST00000355273 945 ntBASIC3.53□□□□□ -1.84
VIMP08670 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
VIMP08670 RNU6-50P-201ENST00000362356 103 ntBASIC3.53□□□□□ -1.84
VIMP08670 RNU6-28P-201ENST00000362378 107 ntBASIC3.53□□□□□ -1.84
VIMP08670 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.53□□□□□ -1.84
VIMP08670 SNORD56.3-201ENST00000363507 71 ntBASIC3.53□□□□□ -1.84
VIMP08670 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.53□□□□□ -1.84
VIMP08670 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.53□□□□□ -1.84
VIMP08670 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.53□□□□□ -1.84
VIMP08670 RNU6-83P-201ENST00000384568 112 ntBASIC3.53□□□□□ -1.84
VIMP08670 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.53□□□□□ -1.84
VIMP08670 USP9YP33-201ENST00000412220 421 ntBASIC3.53□□□□□ -1.84
VIMP08670 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VIMP08670 AL137014.1-201ENST00000420490 1226 ntBASIC3.53□□□□□ -1.84
VIMP08670 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.53□□□□□ -1.84
VIMP08670 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms