Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL355810.1-201ENST00000614629 552 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AL354798.1-201ENST00000622505 329 ntBASIC3.58□□□□□ -1.84
SIX3O95343 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 AC012442.3-202ENST00000636742 206 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
SIX3O95343 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 SGO1P2-201ENST00000429458 1589 ntBASIC3.58□□□□□ -1.84
SIX3O95343 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.58□□□□□ -1.84
SIX3O95343 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SIX3O95343 MTND5P24-201ENST00000438892 1767 ntBASIC3.58□□□□□ -1.84
SIX3O95343 AC233263.6-201ENST00000631132 1963 ntBASIC3.58□□□□□ -1.84
SIX3O95343 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 MIR218-2-201ENST00000385006 110 ntBASIC3.57□□□□□ -1.84
SIX3O95343 HMGB1P17-201ENST00000403495 628 ntBASIC3.57□□□□□ -1.84
SIX3O95343 RNU4-65P-201ENST00000410473 140 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC006960.1-201ENST00000419980 153 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 AC007742.1-201ENST00000425789 329 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 ELOCP26-201ENST00000436067 329 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL022578.1-201ENST00000439330 1433 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL606517.1-201ENST00000446914 387 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.57□□□□□ -1.84
SIX3O95343 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 RPL7P18-201ENST00000478965 734 ntBASIC3.57□□□□□ -1.84
SIX3O95343 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
SIX3O95343 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 VN1R104P-201ENST00000505115 1009 ntBASIC3.57□□□□□ -1.84
SIX3O95343 USP9YP5-201ENST00000511770 630 ntBASIC3.57□□□□□ -1.84
SIX3O95343 RNU1-61P-201ENST00000516107 151 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 NBEAP1-201ENST00000554452 979 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX3O95343 AC053481.4-201ENST00000583164 216 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AL390208.1-201ENST00000605885 644 ntBASIC3.57□□□□□ -1.84
SIX3O95343 RNU1-30P-201ENST00000606575 163 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC080013.3-201ENST00000606839 578 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC007349.4-201ENST00000608114 532 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AC019176.2-201ENST00000611579 315 ntBASIC3.57□□□□□ -1.84
SIX3O95343 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX3O95343 AL357559.1-201ENST00000622228 274 ntBASIC3.57□□□□□ -1.84
SIX3O95343 AP001002.2-201ENST00000625137 386 ntBASIC3.57□□□□□ -1.84
SIX3O95343 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.57□□□□□ -1.84
SIX3O95343 AP000553.6-201ENST00000641242 118 ntBASIC3.57□□□□□ -1.84
SIX3O95343 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 AP001148.1-201ENST00000624124 2359 ntBASIC3.56□□□□□ -1.84
SIX3O95343 CEP170P1-201ENST00000502249 4587 ntBASIC3.56□□□□□ -1.84
SIX3O95343 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
SIX3O95343 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 MTCO1P9-201ENST00000505577 1534 ntBASIC3.56□□□□□ -1.84
SIX3O95343 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.56□□□□□ -1.84
SIX3O95343 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX3O95343 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
SIX3O95343 RNA5SP295-201ENST00000362655 121 ntBASIC3.56□□□□□ -1.84
SIX3O95343 RNA5SP42-201ENST00000364278 115 ntBASIC3.56□□□□□ -1.84
SIX3O95343 MIR34B-201ENST00000385076 84 ntBASIC3.56□□□□□ -1.84
SIX3O95343 PTMAP5-201ENST00000393073 333 ntBASIC3.56□□□□□ -1.84
SIX3O95343 RPL23AP29-201ENST00000397284 453 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC093698.1-201ENST00000423843 571 ntBASIC3.56□□□□□ -1.84
SIX3O95343 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 NEK4P1-201ENST00000433383 879 ntBASIC3.56□□□□□ -1.84
SIX3O95343 COX7BP2-201ENST00000437976 242 ntBASIC3.56□□□□□ -1.84
SIX3O95343 RABEPKP1-201ENST00000440529 1026 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 AC104978.1-201ENST00000449387 391 ntBASIC3.56□□□□□ -1.84
SIX3O95343 BX322784.1-201ENST00000455793 1077 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.56□□□□□ -1.84
SIX3O95343 RNU7-136P-201ENST00000458819 69 ntBASIC3.56□□□□□ -1.84
SIX3O95343 MEMO1P3-201ENST00000459811 302 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC017015.1-201ENST00000477387 286 ntBASIC3.56□□□□□ -1.84
SIX3O95343 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 NIPA2P2-201ENST00000496376 1083 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AL139099.1-201ENST00000497398 403 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.56□□□□□ -1.84
SIX3O95343 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 SNORA31.8-201ENST00000516327 108 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX3O95343 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SIX3O95343 MTND4P33-201ENST00000556706 766 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 AC004853.1-201ENST00000604902 698 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AC110741.2-201ENST00000605278 268 ntBASIC3.56□□□□□ -1.84
SIX3O95343 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.56□□□□□ -1.84
SIX3O95343 AC005344.1-201ENST00000613391 459 ntBASIC3.56□□□□□ -1.84
SIX3O95343 AL732372.2-225ENST00000642124 456 ntBASIC3.56□□□□□ -1.84
SIX3O95343 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.56□□□□□ -1.84
SIX3O95343 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX3O95343 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX3O95343 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms