Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 MTCYBP16-201ENST00000509187 1129 ntBASIC3.33□□□□□ -1.88
SDC3O75056 ARL2BPP6-201ENST00000512757 439 ntBASIC3.33□□□□□ -1.88
SDC3O75056 RN7SKP83-201ENST00000516512 178 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC126177.3-201ENST00000551839 688 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC3O75056 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.33□□□□□ -1.88
SDC3O75056 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 AC067852.3-201ENST00000589177 561 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 VN1R83P-201ENST00000595685 445 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AC006557.5-201ENST00000603126 811 ntBASIC3.33□□□□□ -1.88
SDC3O75056 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 AC124312.4-201ENST00000605533 310 ntBASIC3.33□□□□□ -1.88
SDC3O75056 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.33□□□□□ -1.88
SDC3O75056 AC024257.5-201ENST00000612739 531 ntBASIC3.33□□□□□ -1.88
SDC3O75056 XIST_intron.1-201ENST00000619444 68 ntBASIC3.33□□□□□ -1.88
SDC3O75056 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.33□□□□□ -1.88
SDC3O75056 MKKS-204ENST00000639674 192 ntBASIC3.33□□□□□ -1.88
SDC3O75056 ZNF542P-204ENST00000482727 1305 ntBASIC3.33□□□□□ -1.88
SDC3O75056 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 AC116096.1-201ENST00000566804 2314 ntBASIC3.33□□□□□ -1.88
SDC3O75056 Z83843.1-201ENST00000604070 3685 ntBASIC3.33□□□□□ -1.88
SDC3O75056 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SDC3O75056 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.33□□□□□ -1.88
SDC3O75056 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.33□□□□□ -1.88
SDC3O75056 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC3O75056 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SDC3O75056 RNA5SP42-201ENST00000364278 115 ntBASIC3.32□□□□□ -1.88
SDC3O75056 SNORA51.6-201ENST00000384151 125 ntBASIC3.32□□□□□ -1.88
SDC3O75056 MIR506-201ENST00000384998 124 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AL024474.1-201ENST00000404655 591 ntBASIC3.32□□□□□ -1.88
SDC3O75056 RPL23AP47-201ENST00000408017 460 ntBASIC3.32□□□□□ -1.88
SDC3O75056 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 RPS15AP6-201ENST00000420703 385 ntBASIC3.32□□□□□ -1.88
SDC3O75056 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 RPL31P12-201ENST00000422587 358 ntBASIC3.32□□□□□ -1.88
SDC3O75056 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC3O75056 NEK4P1-201ENST00000433383 879 ntBASIC3.32□□□□□ -1.88
SDC3O75056 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 AC097262.1-201ENST00000452559 548 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 AL049873.1-201ENST00000480540 376 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC013828.1-201ENST00000481845 158 ntBASIC3.32□□□□□ -1.88
SDC3O75056 RPL23AP44-201ENST00000482216 473 ntBASIC3.32□□□□□ -1.88
SDC3O75056 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC3O75056 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC3O75056 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SDC3O75056 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC3O75056 RN7SKP60-201ENST00000516985 239 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC087808.1-201ENST00000520501 361 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AP001189.2-201ENST00000527320 189 ntBASIC3.32□□□□□ -1.88
SDC3O75056 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 AL139174.1-201ENST00000531489 886 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC3O75056 AC008127.2-201ENST00000549925 1075 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC087481.2-201ENST00000565492 330 ntBASIC3.32□□□□□ -1.88
SDC3O75056 MIR4509-3-201ENST00000578671 94 ntBASIC3.32□□□□□ -1.88
SDC3O75056 MIR4509-2-201ENST00000583920 94 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 AL390838.2-201ENST00000602394 274 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AL162274.2-201ENST00000614406 332 ntBASIC3.32□□□□□ -1.88
SDC3O75056 AC008083.4-201ENST00000615076 444 ntBASIC3.32□□□□□ -1.88
SDC3O75056 MIR4509-1-201ENST00000618224 94 ntBASIC3.32□□□□□ -1.88
SDC3O75056 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 OR6C71P-202ENST00000641886 1107 ntBASIC3.32□□□□□ -1.88
SDC3O75056 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 AC244517.1-201ENST00000606030 2086 ntBASIC3.32□□□□□ -1.88
SDC3O75056 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC3O75056 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
SDC3O75056 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
SDC3O75056 NUP58P1-201ENST00000502546 1738 ntBASIC3.31□□□□□ -1.88
SDC3O75056 RNU6-712P-201ENST00000410558 100 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.31□□□□□ -1.88
SDC3O75056 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SDC3O75056 AC106883.1-201ENST00000418805 562 ntBASIC3.31□□□□□ -1.88
SDC3O75056 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC3O75056 APOOP4-201ENST00000513530 597 ntBASIC3.31□□□□□ -1.88
SDC3O75056 RNA5SP468-201ENST00000516782 93 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms