Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC093156.1-201ENST00000440382 670 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.85□□□□□ -1.95
SHOX2O60902 RPL23AP23-201ENST00000452590 471 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 AL109741.2-201ENST00000455561 343 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 AC117440.1-201ENST00000474107 571 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.85□□□□□ -1.95
SHOX2O60902 AC133963.2-201ENST00000513686 578 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 FAM60DP-201ENST00000524174 632 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC2.85□□□□□ -1.95
SHOX2O60902 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 AC113368.1-201ENST00000603736 382 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 OR2AS2P-201ENST00000606902 342 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 AC004775.1-201ENST00000607389 753 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 MIR7111-201ENST00000619751 72 ntBASIC2.85□□□□□ -1.95
SHOX2O60902 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SHOX2O60902 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
SHOX2O60902 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.85□□□□□ -1.95
SHOX2O60902 AC092593.1-201ENST00000515413 1815 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
SHOX2O60902 RNU1-33P-201ENST00000364249 162 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 RNU6-272P-201ENST00000411028 104 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 RNA5SP247-201ENST00000411181 105 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 HMGB3P31-201ENST00000413333 595 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.84□□□□□ -1.95
SHOX2O60902 RFESDP1-201ENST00000422350 461 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 MTND4P24-201ENST00000424002 397 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC010285.1-201ENST00000470580 392 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 UBL5P3-201ENST00000475112 231 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC104057.1-201ENST00000515547 497 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 RNA5SP402-201ENST00000517148 110 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC239860.2-201ENST00000525886 270 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 NCAPGP2-201ENST00000557911 754 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC2.84□□□□□ -1.95
SHOX2O60902 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 RPL12P50-201ENST00000603116 116 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC015871.2-201ENST00000603605 948 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC2.84□□□□□ -1.95
SHOX2O60902 AC099506.2-201ENST00000623074 221 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.84□□□□□ -1.95
SHOX2O60902 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.84□□□□□ -1.95
SHOX2O60902 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
SHOX2O60902 MTCO1P18-201ENST00000455518 1419 ntBASIC2.84□□□□□ -1.96
SHOX2O60902 AC009487.2-201ENST00000420969 6821 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
SHOX2O60902 RNU6-374P-201ENST00000364146 108 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 RNU1-101P-201ENST00000391171 127 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 RNA5SP181-201ENST00000410246 98 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 RNA5SP56-201ENST00000410277 118 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 HSPE1P1-201ENST00000421494 318 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 DUTP6-201ENST00000425573 462 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC2.83□□□□□ -1.96
SHOX2O60902 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 AL513043.1-201ENST00000439124 535 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AC114878.1-201ENST00000441166 358 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 Z75741.1-201ENST00000446793 314 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 HMGB1P15-201ENST00000453854 435 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.83□□□□□ -1.96
SHOX2O60902 AC015724.1-201ENST00000478577 156 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AC004924.1-201ENST00000480160 781 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 AC068724.1-201ENST00000487100 792 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.83□□□□□ -1.96
SHOX2O60902 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.83□□□□□ -1.96
SHOX2O60902 SNORA31.15-201ENST00000516771 132 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 SNORD59.2-201ENST00000516873 68 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 RNU6-56P-201ENST00000516986 93 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 SNORA31.20-201ENST00000517111 133 ntBASIC2.83□□□□□ -1.96
SHOX2O60902 IGKV2D-36-201ENST00000518643 226 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms