Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU4-65P-201ENST00000410473 140 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 RNA5SP293-201ENST00000410527 113 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC006960.1-201ENST00000419980 153 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC013262.1-201ENST00000426710 252 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC079780.1-201ENST00000428259 207 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC012497.1-201ENST00000429392 575 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 RPL23AP83-201ENST00000434984 473 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.43□□□□□ -1.86
CLDN3O15551 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.43□□□□□ -1.86
CLDN3O15551 RPL23AP22-201ENST00000437556 453 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC108734.1-201ENST00000439549 399 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.43□□□□□ -1.86
CLDN3O15551 MTND2P19-201ENST00000449129 1012 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 RPS23P3-201ENST00000470993 430 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.43□□□□□ -1.86
CLDN3O15551 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC010265.1-201ENST00000513509 211 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC104417.1-201ENST00000523974 751 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.43□□□□□ -1.86
CLDN3O15551 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
CLDN3O15551 EEF1B2P4-201ENST00000551398 348 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AL845331.3-202ENST00000562856 261 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 UBL5P2-201ENST00000583788 219 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AP001330.4-201ENST00000604350 154 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AL365400.2-201ENST00000605604 902 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AL390240.1-201ENST00000612950 384 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC100793.4-201ENST00000613683 429 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.43□□□□□ -1.86
CLDN3O15551 SNORA50A-202ENST00000629536 136 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.43□□□□□ -1.86
CLDN3O15551 MIR622-201ENST00000638396 96 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
CLDN3O15551 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.43□□□□□ -1.86
CLDN3O15551 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.43□□□□□ -1.86
CLDN3O15551 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CLDN3O15551 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CLDN3O15551 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AL591034.1-201ENST00000407447 340 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 RAC1P8-201ENST00000427086 527 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.42□□□□□ -1.86
CLDN3O15551 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 AC006445.1-201ENST00000491925 405 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC096751.1-202ENST00000502691 1067 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC026414.1-201ENST00000504046 698 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC016550.1-201ENST00000505348 785 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC006390.1-201ENST00000508068 283 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 SNRPGP16-201ENST00000533275 226 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 AL163153.1-201ENST00000554223 283 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC012669.1-201ENST00000603209 283 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 PRELID3BP8-201ENST00000604148 295 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AL591516.1-201ENST00000611326 274 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AC231759.1-201ENST00000616455 597 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 AL360181.4-201ENST00000621752 134 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 CYP3A51P-201ENST00000633513 256 ntBASIC3.42□□□□□ -1.86
CLDN3O15551 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.42□□□□□ -1.86
CLDN3O15551 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
CLDN3O15551 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
CLDN3O15551 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.41□□□□□ -1.86
CLDN3O15551 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CLDN3O15551 AL021368.2-201ENST00000606125 5352 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AL035405.1-201ENST00000400795 710 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 DUTP6-201ENST00000425573 462 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC092634.2-201ENST00000428146 1010 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 HMGN1P5-201ENST00000448591 263 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.41□□□□□ -1.86
CLDN3O15551 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.41□□□□□ -1.86
CLDN3O15551 HMGB1P25-201ENST00000468402 607 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.41□□□□□ -1.86
CLDN3O15551 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.41□□□□□ -1.86
CLDN3O15551 AC114967.1-201ENST00000504890 259 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 KLHL2P1-201ENST00000508691 521 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 RNU6-467P-201ENST00000517027 110 ntBASIC3.41□□□□□ -1.86
CLDN3O15551 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms