Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 Y_RNA.372-201ENST00000365599 102 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC127391.1-201ENST00000411737 98 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RPL36AP10-201ENST00000421785 322 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL132765.1-201ENST00000434165 553 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC122718.1-201ENST00000439448 744 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL353572.1-201ENST00000442490 417 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC112653.1-201ENST00000443851 386 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 Z95327.1-201ENST00000446082 482 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RPL7AP28-201ENST00000464513 571 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 FAM133DP-201ENST00000464802 691 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RPL35P6-201ENST00000490024 372 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RPS4XP18-201ENST00000495480 763 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AP000907.2-201ENST00000530827 353 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 PDCD5P1-201ENST00000543528 309 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC099489.2-201ENST00000574976 260 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 SNORA59B-202ENST00000578183 701 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC060771.1-201ENST00000582031 164 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RN7SL435P-201ENST00000584418 282 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 VN1R85P-201ENST00000601587 426 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL139286.1-201ENST00000604465 483 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL008729.2-201ENST00000606393 473 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL161734.1-201ENST00000609720 557 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC006329.2-201ENST00000611491 394 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL355073.2-201ENST00000612106 557 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AL133173.2-201ENST00000614270 90 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC015871.5-202ENST00000623252 701 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC040168.1-201ENST00000623594 991 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 MAPK10-320ENST00000641462 6696 ntBASIC4.55□□□□□ -1.68
TDP1Q9NUW8 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
TDP1Q9NUW8 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 MAPK10-304ENST00000641341 3984 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC011460.1-201ENST00000636268 1834 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC019155.1-201ENST00000382242 574 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RNU6-761P-201ENST00000384148 107 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RNU6-1103P-201ENST00000384150 107 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 SNORD51-201ENST00000384320 80 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL022722.2-201ENST00000402519 180 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL590002.1-201ENST00000406554 418 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RPS20P14-201ENST00000412545 360 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC092832.1-201ENST00000422934 400 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC019097.1-201ENST00000424783 735 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC133104.1-201ENST00000429100 218 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RPL21P91-201ENST00000429231 479 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RPL23AP25-201ENST00000430973 463 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RPL34P6-201ENST00000432390 345 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 FCF1P1-201ENST00000432690 571 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 MTATP6P30-201ENST00000443540 664 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 RNA5SP103-201ENST00000459503 118 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC055855.1-201ENST00000489563 579 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC019235.1-201ENST00000503847 207 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC093824.1-201ENST00000508796 343 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC008958.1-201ENST00000511047 682 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC010493.1-201ENST00000513479 292 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC026402.1-201ENST00000513642 170 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 Vault.3-201ENST00000516676 95 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AC107934.1-201ENST00000522215 217 ntBASIC4.54□□□□□ -1.68
TDP1Q9NUW8 AP001893.2-201ENST00000526949 202 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms