Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
DDX28Q9NUL7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 SNORA72.3-201ENST00000365074 132 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MIR7-3-201ENST00000384898 110 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 SNORA11.1-201ENST00000408133 129 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC092447.6-201ENST00000414578 210 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC099677.1-201ENST00000420575 175 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 RPL7P46-201ENST00000425129 740 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 ATP5F1P1-201ENST00000433775 569 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MTND4LP10-201ENST00000435146 291 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 BTF3P5-201ENST00000457252 467 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 snoU13.22-201ENST00000459428 104 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC087312.1-201ENST00000471411 480 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL024509.2-201ENST00000493462 493 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MTCYBP17-201ENST00000503579 789 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 WBP1LP4-201ENST00000505043 344 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC110768.1-201ENST00000509222 400 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC079395.1-201ENST00000510981 262 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 RNA5SP208-201ENST00000516156 78 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC018630.1-201ENST00000541376 925 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC022662.1-201ENST00000580252 331 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL109653.1-201ENST00000603091 248 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC004987.4-201ENST00000603383 338 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC079684.1-201ENST00000621405 437 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AC004009.2-201ENST00000623016 728 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 AL078595.3-201ENST00000623815 1166 ntBASIC3.34□□□□□ -1.87
DDX28Q9NUL7 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
DDX28Q9NUL7 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.34□□□□□ -1.88
DDX28Q9NUL7 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 Y_RNA.192-201ENST00000363977 102 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RNU6-283P-201ENST00000364788 107 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RNU6-213P-201ENST00000384051 104 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MIR449B-201ENST00000384995 97 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RNU6-55P-201ENST00000411092 107 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RNU6-954P-201ENST00000411355 107 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 EZH2P1-201ENST00000431167 291 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC084290.1-201ENST00000434995 374 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL133547.1-201ENST00000448546 220 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC010401.1-201ENST00000463867 348 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 MTCO3P35-201ENST00000485582 781 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RPS3AP50-201ENST00000487064 803 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RPS4XP15-201ENST00000489210 795 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AL139099.1-201ENST00000497398 403 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 TMEM251P1-201ENST00000503717 318 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 RAC1P2-201ENST00000511164 579 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC109445.1-201ENST00000512356 383 ntBASIC3.33□□□□□ -1.88
DDX28Q9NUL7 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.33□□□□□ -1.88
DDX28Q9NUL7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms