Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR217-201ENST00000384817 110 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 RNA5SP107-201ENST00000411358 122 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 MTCO3P1-205ENST00000422088 832 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 Z93242.1-201ENST00000427102 353 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 MTCYBP32-201ENST00000427945 1084 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC018644.1-201ENST00000429934 551 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 ATP5JP1-201ENST00000431631 322 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 FCF1P6-201ENST00000456841 595 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC091179.1-201ENST00000461606 579 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC013828.1-201ENST00000481845 158 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 RNU1-95P-201ENST00000516357 160 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 RNU1-128P-201ENST00000516704 160 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 SNORA48.10-201ENST00000516965 160 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC090502.2-201ENST00000549267 280 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC087897.1-201ENST00000550134 156 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS39Q96JC1 VN1R87P-201ENST00000596706 487 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 BNIP3P27-201ENST00000599991 412 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AP000238.1-201ENST00000608759 426 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AP005137.2-201ENST00000609238 400 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 AC034229.5-201ENST00000624258 185 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS39Q96JC1 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS39Q96JC1 ZNF285B-201ENST00000561698 1767 ntBASIC3.38□□□□□ -1.87
VPS39Q96JC1 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS39Q96JC1 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS39Q96JC1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS39Q96JC1 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RNU6-492P-201ENST00000363035 104 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RNU6-1066P-201ENST00000363573 105 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 SNORA5A-201ENST00000384111 134 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RNU6-878P-201ENST00000384578 110 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 ARF4P3-201ENST00000397387 509 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RNU2-28P-201ENST00000410457 189 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 RPL7P30-201ENST00000420888 709 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RAC1P8-201ENST00000427086 527 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 SDR42E1P3-201ENST00000438345 502 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 COX6CP18-201ENST00000448769 222 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC093392.2-201ENST00000450682 337 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RN7SL542P-201ENST00000467147 294 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RN7SL442P-201ENST00000473804 320 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS39Q96JC1 PRELID3BP6-201ENST00000503839 571 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC112198.1-201ENST00000505369 1220 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 FCF1P8-201ENST00000510322 597 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC104619.4-201ENST00000510773 249 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 snoZ278.1-201ENST00000517059 112 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC023632.4-201ENST00000517783 191 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC239860.2-201ENST00000525886 270 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC118942.1-201ENST00000529674 1035 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS39Q96JC1 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 YWHAZP1-201ENST00000556286 722 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 AL022067.1-201ENST00000602426 454 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 RPL23AP92-201ENST00000603609 255 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC012443.1-201ENST00000605605 231 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AL583856.2-201ENST00000606298 543 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC092954.1-201ENST00000609121 445 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AL391834.2-201ENST00000609982 546 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC022306.3-201ENST00000619930 550 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC018816.2-201ENST00000621460 353 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC010608.3-201ENST00000625048 527 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS39Q96JC1 MTND4P9-201ENST00000507819 1346 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 AC011460.1-201ENST00000636268 1834 ntBASIC3.37□□□□□ -1.87
VPS39Q96JC1 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS39Q96JC1 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS39Q96JC1 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
VPS39Q96JC1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS39Q96JC1 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS39Q96JC1 HMGB1P5-201ENST00000255320 642 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 RNA5SP124-201ENST00000362739 110 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 MIR493-201ENST00000385254 89 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 RAB9AP3-201ENST00000412737 573 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 AL449283.1-202ENST00000418249 604 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 TMEM167AP1-201ENST00000423409 219 ntBASIC3.36□□□□□ -1.87
VPS39Q96JC1 PTP4A1P7-201ENST00000423476 514 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms