Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC112198.4-201ENST00000515450 351 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RN7SKP83-201ENST00000516512 178 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC022690.1-201ENST00000526681 550 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC138915.2-201ENST00000569776 97 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 LARP7P2-201ENST00000575306 125 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 MIR4325-201ENST00000583049 90 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 BNIP3P24-201ENST00000593398 557 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 BDH2P1-201ENST00000602288 736 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RNU6-1192P-201ENST00000612197 107 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AC002076.2-201ENST00000617362 122 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 RNU6-489P-201ENST00000618289 107 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 MFSD8-245ENST00000641743 948 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 AL353743.1-202ENST00000431724 1695 ntBASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.51□□□□□ -1.85
HDDC3Q8N4P3 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AL645937.1-201ENST00000641739 1652 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 SNORD65.1-201ENST00000390889 71 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 U3.39-201ENST00000408569 239 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 RPL21P32-201ENST00000419877 477 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AL137014.1-201ENST00000420490 1226 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AL049610.1-201ENST00000423374 372 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 PSMA6P3-201ENST00000428242 164 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC011242.1-201ENST00000433596 1158 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 SKP1P1-201ENST00000438081 489 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 PTGES3P5-201ENST00000455109 434 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 ARL2BPP6-201ENST00000512757 439 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 RNU6-711P-201ENST00000517255 106 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 IGKV2-26-201ENST00000518305 343 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 ERHP1-201ENST00000523006 310 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC027807.1-201ENST00000559921 996 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AL162274.2-201ENST00000614406 332 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 AC007275.1-201ENST00000621243 671 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 U6.101-201ENST00000637707 76 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 ZNF807-201ENST00000328088 1707 ntBASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HDDC3Q8N4P3 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 RNU1-101P-201ENST00000391171 127 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 SNRPEP2-201ENST00000397592 279 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC096533.1-201ENST00000411645 353 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 C1DP1-201ENST00000426049 402 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 MOB1AP1-201ENST00000430903 535 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 FTH1P25-201ENST00000447665 469 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 RPS3AP14-201ENST00000483907 780 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 RNU6-1028P-201ENST00000517164 93 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 DEFB130C-202ENST00000530001 230 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC006504.3-201ENST00000586818 523 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AL137843.1-201ENST00000605078 385 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 MIR7112-201ENST00000616126 65 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 U7.8-201ENST00000619968 63 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 AC126544.2-201ENST00000625174 749 ntBASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HDDC3Q8N4P3 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.48□□□□□ -1.85
HDDC3Q8N4P3 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.48□□□□□ -1.85
HDDC3Q8N4P3 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HDDC3Q8N4P3 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HDDC3Q8N4P3 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HDDC3Q8N4P3 COTL1P1-201ENST00000422309 375 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms