Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MTND4P13-201ENST00000402078 1023 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC129850.1-201ENST00000436203 508 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.89□□□□□ -2.11
USF3Q68DE3 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USF3Q68DE3 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.89□□□□□ -2.11
USF3Q68DE3 SNRPGP18-201ENST00000553000 214 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC078814.3-201ENST00000553036 491 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 OR11H5P-201ENST00000554039 926 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC011494.1-201ENST00000596454 237 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC103710.2-201ENST00000609912 942 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC245517.5-201ENST00000611529 162 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 PISRT1-201ENST00000626175 531 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 XKRY2-202ENST00000623874 1581 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 XKRY-202ENST00000624960 1581 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USF3Q68DE3 SNORA80E-201ENST00000384744 137 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 RNU6ATAC16P-201ENST00000408591 138 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.89□□□□□ -2.11
USF3Q68DE3 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.89□□□□□ -2.11
USF3Q68DE3 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USF3Q68DE3 ZKSCAN7P1-201ENST00000543668 673 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 OR4T1P-201ENST00000554933 911 ntBASIC1.89□□□□□ -2.11
USF3Q68DE3 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC1.89□□□□□ -2.11
USF3Q68DE3 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.89□□□□□ -2.11
USF3Q68DE3 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
USF3Q68DE3 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
USF3Q68DE3 RNU1-138P-201ENST00000384093 164 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 SNORA67.3-201ENST00000384366 140 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 PTP4A1P7-201ENST00000423476 514 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 AC098826.1-201ENST00000433943 471 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 RPS15AP28-201ENST00000435088 386 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.88□□□□□ -2.11
USF3Q68DE3 AC138649.5-201ENST00000637456 137 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.88□□□□□ -2.11
USF3Q68DE3 MAPK10-322ENST00000641485 4530 ntBASIC1.88□□□□□ -2.11
USF3Q68DE3 Y_RNA.164-201ENST00000363709 102 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 RNU6-14P-201ENST00000384630 106 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
USF3Q68DE3 LINC00888-204ENST00000487386 421 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 RN7SKP219-201ENST00000516825 296 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AP003467.2-201ENST00000520175 319 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 AP000889.2-201ENST00000532684 490 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AK6P1-201ENST00000540219 478 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.87□□□□□ -2.11
USF3Q68DE3 MIR4498-201ENST00000577599 66 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 NSRP1P1-201ENST00000444067 1693 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 ZNF271P-202ENST00000465539 1970 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
USF3Q68DE3 MIR221-201ENST00000385135 110 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
USF3Q68DE3 SNORA11.4-201ENST00000408823 129 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC1.87□□□□□ -2.11
USF3Q68DE3 AC004866.2-201ENST00000438285 481 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.87□□□□□ -2.11
USF3Q68DE3 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC1.87□□□□□ -2.11
USF3Q68DE3 GTF2IP9-201ENST00000502460 301 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC1.87□□□□□ -2.11
USF3Q68DE3 TBCAP3-201ENST00000512475 312 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 MTCYBP28-201ENST00000566728 1132 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.87□□□□□ -2.11
USF3Q68DE3 XIST_intron.1-201ENST00000619444 68 ntBASIC1.87□□□□□ -2.11
USF3Q68DE3 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
USF3Q68DE3 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
USF3Q68DE3 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
USF3Q68DE3 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC1.87□□□□□ -2.11
USF3Q68DE3 AP006437.1-201ENST00000641440 3685 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AL445669.2-201ENST00000454425 421 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 AC132942.1-201ENST00000486753 483 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.86□□□□□ -2.11
USF3Q68DE3 CD24P2-201ENST00000565486 219 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 AC007687.1-201ENST00000602704 304 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AL592437.2-201ENST00000421655 2434 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
USF3Q68DE3 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.86□□□□□ -2.11
USF3Q68DE3 ATP5F1P1-201ENST00000433775 569 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 AC027673.1-201ENST00000456245 405 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 RPL23AP70-201ENST00000483361 460 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
USF3Q68DE3 AC087241.2-201ENST00000535801 324 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AC048347.1-201ENST00000624621 427 ntBASIC1.86□□□□□ -2.11
USF3Q68DE3 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.86□□□□□ -2.11
USF3Q68DE3 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
USF3Q68DE3 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
USF3Q68DE3 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
USF3Q68DE3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms