Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AL445584.1-201ENST00000431451 330 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 LSM1P1-201ENST00000438629 273 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AL662791.1-201ENST00000441992 928 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 USP9YP34-201ENST00000453983 808 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 DHFRP3-201ENST00000455595 559 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 RPS20P24-201ENST00000457473 361 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC041039.1-201ENST00000485656 536 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC109458.1-201ENST00000508858 316 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 DUXAP2-201ENST00000519198 589 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC135628.1-201ENST00000568867 534 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC141257.3-201ENST00000572906 215 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 BNIP3P23-201ENST00000599655 511 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 DUXAP11-201ENST00000603858 526 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC107214.2-201ENST00000608204 634 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC064801.1-201ENST00000612025 407 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC018755.4-201ENST00000619715 454 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 AC008443.7-201ENST00000622195 246 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 U6.98-201ENST00000637157 84 ntBASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
PDLIM3Q53GG5 NUP58P1-201ENST00000502546 1738 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 ZNF962P-201ENST00000443465 3140 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC004944.1-201ENST00000517807 3059 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNA5SP295-201ENST00000362655 121 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNU6-433P-201ENST00000363216 104 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNU5F-7P-201ENST00000363696 115 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AP000567.1-201ENST00000406413 156 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AMD1P2-201ENST00000412936 992 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC007390.1-201ENST00000415722 356 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 TMSB10P2-201ENST00000416049 131 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 MTATP6P27-201ENST00000416987 621 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL139095.3-201ENST00000419672 1203 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 OFD1P18Y-201ENST00000420889 959 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL159169.1-201ENST00000421119 127 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC012065.2-201ENST00000421295 375 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL590233.1-201ENST00000430017 456 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL590103.1-201ENST00000434488 307 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 MTCYBP45-201ENST00000435243 565 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RPL23AP89-201ENST00000439324 255 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL831737.1-201ENST00000441288 271 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC002381.1-201ENST00000447049 280 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RPS27AP8-201ENST00000452665 445 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RPL30P9-201ENST00000465586 330 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RPL7P1-201ENST00000468161 747 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 HMGB1P36-201ENST00000487709 576 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC025554.1-201ENST00000505641 188 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL592156.1-201ENST00000508758 304 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RPL23AP94-201ENST00000512518 302 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNU6-27P-201ENST00000516146 107 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 RNU6-1073P-201ENST00000517182 106 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 PAICSP4-201ENST00000517543 1253 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 TRMT10BP1-201ENST00000519377 943 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC109635.4-202ENST00000531666 412 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC092851.1-201ENST00000535964 478 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 CCNG2P1-201ENST00000549521 1000 ntBASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.44□□□□□ -1.86
PDLIM3Q53GG5 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms