Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIR218-2-201ENST00000385006 110 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 MT-TC-201ENST00000387405 66 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 HMGN2P8-201ENST00000391458 268 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RPL7P60-201ENST00000397636 735 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RPL31P1-201ENST00000398116 372 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 DHFRP6-201ENST00000401776 268 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RPL7P30-201ENST00000420888 709 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC090960.1-201ENST00000421072 306 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AL049610.1-201ENST00000423374 372 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 ZYG11AP1-201ENST00000430329 837 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 MTND1P20-201ENST00000430341 950 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 CKS1BP5-201ENST00000434172 273 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RPL23AP74-201ENST00000437246 471 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 UBE2D3P4-201ENST00000441973 436 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 Z83846.1-201ENST00000446798 265 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 EEF1E1P1-201ENST00000446998 430 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 PRDX3P3-201ENST00000447765 522 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 PPIAP3-201ENST00000450588 505 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 SNORD105B-201ENST00000458770 79 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 RN7SL293P-201ENST00000481765 281 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC026726.1-201ENST00000512859 601 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 OR7K1P-201ENST00000546439 926 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC007954.1-201ENST00000554198 494 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC135628.1-201ENST00000568867 534 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC020914.6-201ENST00000594327 272 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC010738.1-201ENST00000604970 987 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC007179.3-201ENST00000604976 235 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AL034351.1-201ENST00000605288 668 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 AC091931.1-201ENST00000623488 728 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AF246928.1-201ENST00000623768 87 ntBASIC3.99□□□□□ -1.77
USP41Q3LFD5 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USP41Q3LFD5 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.99□□□□□ -1.77
USP41Q3LFD5 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL359893.1-201ENST00000447628 1580 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 NCAPGP1-201ENST00000505112 1814 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 OR4G11P-202ENST00000642116 1414 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 MIR124-3-201ENST00000384866 87 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 FTH1P6-201ENST00000430768 320 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC096638.2-201ENST00000434965 711 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 RPL23AP83-201ENST00000434984 473 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 SETP8-201ENST00000435341 628 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 MTCYBP39-201ENST00000437562 491 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 CYCSP43-201ENST00000438233 310 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 SNORA71B-202ENST00000439232 272 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 RPL29P29-201ENST00000448725 423 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 MEMO1P3-201ENST00000459811 302 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC146507.1-201ENST00000468335 354 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USP41Q3LFD5 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 MTCO3P44-201ENST00000510977 541 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 RAC1P2-201ENST00000511164 579 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL139174.1-201ENST00000531489 886 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 RFPL1S-203ENST00000539579 330 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 CBX3P5-201ENST00000552017 521 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC006960.3-201ENST00000561845 705 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 MIR5186-201ENST00000577504 120 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 MIR3922-201ENST00000585192 84 ntBASIC3.98□□□□□ -1.77
USP41Q3LFD5 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.98□□□□□ -1.77
USP41Q3LFD5 Z94722.1-201ENST00000604328 474 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms