Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 DNAJC19P4-201ENST00000440115 345 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 RPL23AP2-201ENST00000471227 466 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC025164.1-201ENST00000496249 478 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 AC108078.1-201ENST00000508073 725 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AP001880.2-201ENST00000538233 448 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.35□□□□□ -1.55
SF3A1Q15459 ATP5J2P6-201ENST00000565203 266 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.35□□□□□ -1.55
SF3A1Q15459 FAM60BP-201ENST00000578364 658 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.35□□□□□ -1.55
SF3A1Q15459 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.35□□□□□ -1.55
SF3A1Q15459 AL603758.1-201ENST00000618654 241 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC073534.2-201ENST00000620377 381 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 AC005086.4-201ENST00000623065 213 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 SEPT14P19-203ENST00000633205 211 ntBASIC5.35□□□□□ -1.55
SF3A1Q15459 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SF3A1Q15459 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SF3A1Q15459 ZFRP1-201ENST00000457579 2970 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
SF3A1Q15459 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SF3A1Q15459 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.34□□□□□ -1.55
SF3A1Q15459 AP001350.1-201ENST00000601906 1524 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SF3A1Q15459 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.34□□□□□ -1.55
SF3A1Q15459 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SF3A1Q15459 RNU6-223P-201ENST00000362830 107 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 RNU5E-8P-201ENST00000363502 116 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 MIR195-201ENST00000385194 87 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 MIR921-201ENST00000401133 56 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 AL109941.1-201ENST00000401925 229 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 FCF1P9-201ENST00000412546 282 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 Z74021.1-201ENST00000423610 407 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 FAR2P4-202ENST00000425399 584 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 C8orf59P1-201ENST00000429930 303 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.34□□□□□ -1.55
SF3A1Q15459 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.34□□□□□ -1.55
SF3A1Q15459 RPL36AP13-201ENST00000457490 317 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 AP000873.1-201ENST00000463987 400 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 AC022795.1-201ENST00000473808 480 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.34□□□□□ -1.55
SF3A1Q15459 RNU6-64P-201ENST00000517119 105 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 RNU6-1073P-201ENST00000517182 106 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.34□□□□□ -1.55
SF3A1Q15459 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.34□□□□□ -1.55
SF3A1Q15459 AC009117.1-201ENST00000563948 554 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.34□□□□□ -1.55
SF3A1Q15459 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.34□□□□□ -1.55
SF3A1Q15459 AC008966.2-201ENST00000606157 453 ntBASIC5.34□□□□□ -1.55
SF3A1Q15459 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
SF3A1Q15459 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.34□□□□□ -1.56
SF3A1Q15459 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.34□□□□□ -1.56
SF3A1Q15459 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SF3A1Q15459 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SF3A1Q15459 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SF3A1Q15459 OR5J1P-201ENST00000313544 939 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 RNA5SP107-201ENST00000411358 122 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC5.33□□□□□ -1.56
SF3A1Q15459 RPL7AP73-201ENST00000413490 353 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 COX6B1P1-201ENST00000415962 213 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC073464.1-201ENST00000429823 534 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.33□□□□□ -1.56
SF3A1Q15459 NRBF2P3-201ENST00000432731 865 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 MTND1P4-201ENST00000435196 415 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.33□□□□□ -1.56
SF3A1Q15459 OR1H1P-201ENST00000448731 937 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AL162389.1-201ENST00000449233 177 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.33□□□□□ -1.56
SF3A1Q15459 snoU13.24-201ENST00000458998 104 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC063943.1-201ENST00000465434 453 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AL049714.1-201ENST00000466686 347 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SF3A1Q15459 AC068305.1-201ENST00000497406 726 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 VN1R104P-201ENST00000505115 1009 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 HMGB1P22-201ENST00000505315 124 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.33□□□□□ -1.56
SF3A1Q15459 RNU6-314P-201ENST00000516574 104 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC011979.2-201ENST00000527568 352 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC105233.3-201ENST00000531125 744 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC105129.1-201ENST00000560250 297 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 BGLT3-201ENST00000564523 994 ntBASIC5.33□□□□□ -1.56
SF3A1Q15459 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms