Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC021382.1-201ENST00000483523 359 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC5.42□□□□□ -1.54
SOX4Q06945 AC012339.2-201ENST00000523996 453 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.42□□□□□ -1.54
SOX4Q06945 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.42□□□□□ -1.54
SOX4Q06945 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.42□□□□□ -1.54
SOX4Q06945 AL358913.1-201ENST00000554342 121 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC5.42□□□□□ -1.54
SOX4Q06945 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.42□□□□□ -1.54
SOX4Q06945 MYL12BP1-201ENST00000569826 507 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AC090615.1-201ENST00000577519 154 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AC011487.3-201ENST00000593607 453 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC5.42□□□□□ -1.54
SOX4Q06945 AC012409.4-201ENST00000612923 249 ntBASIC5.42□□□□□ -1.54
SOX4Q06945 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.42□□□□□ -1.54
SOX4Q06945 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SOX4Q06945 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SOX4Q06945 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SOX4Q06945 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.42□□□□□ -1.54
SOX4Q06945 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SOX4Q06945 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SOX4Q06945 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
SOX4Q06945 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.42□□□□□ -1.54
SOX4Q06945 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
SOX4Q06945 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SOX4Q06945 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SOX4Q06945 RNA5SP258-201ENST00000362750 119 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 SNORA63.7-201ENST00000365579 123 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 Y_RNA.527-201ENST00000384573 102 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 RNU6-954P-201ENST00000411355 107 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 SKA2P1-201ENST00000425592 390 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 AL359265.2-201ENST00000434367 631 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 RPS29P9-201ENST00000440360 171 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 RPL7AP61-201ENST00000443410 636 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AC112498.1-201ENST00000444401 332 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 AC010655.3-201ENST00000478818 450 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 RN7SL319P-201ENST00000480656 221 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 OR7H2P-201ENST00000513483 306 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 SNORA25.10-201ENST00000515926 124 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 RNU6-256P-201ENST00000516747 97 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AC090136.1-201ENST00000520009 240 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 HMGB1P41-201ENST00000520234 440 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 TVP23CP2-201ENST00000571473 623 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 MIR3672-201ENST00000584290 82 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 AL031320.1-201ENST00000604177 357 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AC010424.2-201ENST00000607594 443 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AL355816.1-201ENST00000607951 118 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.41□□□□□ -1.54
SOX4Q06945 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 uc_338.11-201ENST00000619132 160 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 AL450345.1-202ENST00000605741 3881 ntBASIC5.41□□□□□ -1.54
SOX4Q06945 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.41□□□□□ -1.54
SOX4Q06945 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SOX4Q06945 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.41□□□□□ -1.54
SOX4Q06945 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 AP002512.4-202ENST00000641599 4530 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SOX4Q06945 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.4□□□□□ -1.54
SOX4Q06945 RNU6-1115P-201ENST00000362490 106 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 SNORD3H-201ENST00000384486 214 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 RNU6-310P-201ENST00000384655 107 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL035079.1-201ENST00000405210 287 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 AL603908.1-201ENST00000406098 201 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 U3.32-201ENST00000408116 212 ntBASIC5.4□□□□□ -1.54
SOX4Q06945 VDAC1P9-201ENST00000412766 841 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms