Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL4A3Q01955 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A3Q01955 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AL645937.1-201ENST00000641739 1652 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
COL4A3Q01955 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL4A3Q01955 SNORD96B-201ENST00000386148 79 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 RPS20P2-201ENST00000402520 389 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 Z92545.1-201ENST00000411782 234 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AC068533.1-201ENST00000418542 415 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AL353193.1-201ENST00000421444 268 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A3Q01955 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.41□□□□□ -1.7
COL4A3Q01955 SAR1AP4-201ENST00000429225 591 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AC140076.1-201ENST00000449897 361 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AC096576.1-201ENST00000489014 359 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 NIPA2P2-201ENST00000496376 1083 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AC110768.1-201ENST00000509222 400 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 RNA5SP360-201ENST00000516555 118 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AF279873.1-201ENST00000523393 313 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.41□□□□□ -1.7
COL4A3Q01955 AC034268.2-201ENST00000571784 482 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AC243960.4-201ENST00000600532 288 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 AL160413.1-201ENST00000622780 310 ntBASIC4.41□□□□□ -1.7
COL4A3Q01955 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.41□□□□□ -1.7
COL4A3Q01955 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
COL4A3Q01955 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL4A3Q01955 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.4□□□□□ -1.7
COL4A3Q01955 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.4□□□□□ -1.7
COL4A3Q01955 CKAP2P1-201ENST00000555477 2049 ntBASIC4.4□□□□□ -1.7
COL4A3Q01955 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A3Q01955 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
COL4A3Q01955 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.4□□□□□ -1.7
COL4A3Q01955 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A3Q01955 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A3Q01955 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
COL4A3Q01955 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.4□□□□□ -1.7
COL4A3Q01955 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A3Q01955 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.4□□□□□ -1.7
COL4A3Q01955 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.4□□□□□ -1.7
COL4A3Q01955 CASC19-204ENST00000641001 2055 ntBASIC4.4□□□□□ -1.7
COL4A3Q01955 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
COL4A3Q01955 SNORA51.2-201ENST00000364595 132 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 MIR449B-201ENST00000384995 97 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 RNU11-4P-201ENST00000391149 133 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 MIR921-201ENST00000401133 56 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AL122016.1-201ENST00000403365 367 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 RNU2-6P-201ENST00000411404 190 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A3Q01955 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AL365400.1-201ENST00000431854 640 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AL031663.1-201ENST00000437445 219 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 SEPT14P3-201ENST00000439401 183 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 HMGB3P9-201ENST00000441799 583 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AL732372.2-207ENST00000445840 183 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A3Q01955 SEPT14P2-201ENST00000453405 183 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 RNU6-420P-201ENST00000458780 107 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.4□□□□□ -1.71
COL4A3Q01955 SEPT14P4-201ENST00000513445 186 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 FO082796.1-201ENST00000523795 183 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC243972.3-201ENST00000539655 198 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AC037471.2-201ENST00000564941 598 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 MIR3671-201ENST00000580455 88 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.4□□□□□ -1.71
COL4A3Q01955 VN1R84P-201ENST00000593697 235 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 LLPHP1-201ENST00000603571 367 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC007621.1-201ENST00000604544 437 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AL365204.3-201ENST00000612448 685 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 AC009237.17-201ENST00000618111 748 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 YWHAEP7-203ENST00000622054 312 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A3Q01955 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A3Q01955 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A3Q01955 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
COL4A3Q01955 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.4□□□□□ -1.71
COL4A3Q01955 AL672167.1-205ENST00000641112 3080 ntBASIC4.4□□□□□ -1.71
COL4A3Q01955 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
COL4A3Q01955 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms