Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 Y_RNA.373-201ENST00000365600 103 ntBASIC5.39□□□□□ -1.55
LIG3P49916 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 RNU6-432P-201ENST00000384196 109 ntBASIC5.39□□□□□ -1.55
LIG3P49916 MIR223-201ENST00000385204 110 ntBASIC5.39□□□□□ -1.55
LIG3P49916 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LIG3P49916 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.39□□□□□ -1.55
LIG3P49916 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG3P49916 AL359265.2-201ENST00000434367 631 ntBASIC5.39□□□□□ -1.55
LIG3P49916 RPL36AP6-201ENST00000435770 321 ntBASIC5.39□□□□□ -1.55
LIG3P49916 RPL12P46-201ENST00000436610 195 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC5.39□□□□□ -1.55
LIG3P49916 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.39□□□□□ -1.55
LIG3P49916 RN7SL172P-201ENST00000460535 303 ntBASIC5.39□□□□□ -1.55
LIG3P49916 RN7SL799P-201ENST00000475891 298 ntBASIC5.39□□□□□ -1.55
LIG3P49916 HIGD1AP14-201ENST00000507617 282 ntBASIC5.39□□□□□ -1.55
LIG3P49916 FAM206BP-201ENST00000510179 541 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.39□□□□□ -1.55
LIG3P49916 RNA5SP92-201ENST00000516437 110 ntBASIC5.39□□□□□ -1.55
LIG3P49916 RNU6-64P-201ENST00000517119 105 ntBASIC5.39□□□□□ -1.55
LIG3P49916 HMGB1P19-201ENST00000517578 577 ntBASIC5.39□□□□□ -1.55
LIG3P49916 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.39□□□□□ -1.55
LIG3P49916 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.39□□□□□ -1.55
LIG3P49916 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.39□□□□□ -1.55
LIG3P49916 RPL10P14-201ENST00000565265 298 ntBASIC5.39□□□□□ -1.55
LIG3P49916 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.39□□□□□ -1.55
LIG3P49916 OR7E18P-201ENST00000592589 702 ntBASIC5.39□□□□□ -1.55
LIG3P49916 BNIP3P22-201ENST00000593399 556 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AL022099.1-201ENST00000604551 712 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AL122125.1-201ENST00000616999 600 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AC074101.1-201ENST00000637861 241 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AL596275.2-204ENST00000641628 552 ntBASIC5.39□□□□□ -1.55
LIG3P49916 AL596275.2-206ENST00000641957 626 ntBASIC5.39□□□□□ -1.55
LIG3P49916 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 MTND4P14-201ENST00000435799 1354 ntBASIC5.39□□□□□ -1.55
LIG3P49916 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG3P49916 C4BPAP1-201ENST00000415474 1893 ntBASIC5.39□□□□□ -1.55
LIG3P49916 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG3P49916 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG3P49916 MTCO1P9-201ENST00000505577 1534 ntBASIC5.38□□□□□ -1.55
LIG3P49916 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIG3P49916 AL359893.1-201ENST00000447628 1580 ntBASIC5.38□□□□□ -1.55
LIG3P49916 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIG3P49916 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 SNORA67-201ENST00000384423 137 ntBASIC5.38□□□□□ -1.55
LIG3P49916 MT-TC-201ENST00000387405 66 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AL583835.1-201ENST00000399570 407 ntBASIC5.38□□□□□ -1.55
LIG3P49916 DBIP1-201ENST00000401435 260 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LIG3P49916 RNU2-36P-201ENST00000410361 191 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 GAPDHP25-201ENST00000447061 1001 ntBASIC5.38□□□□□ -1.55
LIG3P49916 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 AC002553.2-201ENST00000453217 340 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 SNRPFP3-201ENST00000457792 225 ntBASIC5.38□□□□□ -1.55
LIG3P49916 snoU109.4-201ENST00000458953 143 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC079804.1-201ENST00000461922 436 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC072052.1-201ENST00000496556 306 ntBASIC5.38□□□□□ -1.55
LIG3P49916 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 AC008638.1-201ENST00000506035 866 ntBASIC5.38□□□□□ -1.55
LIG3P49916 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 SCARNA20.4-201ENST00000516969 131 ntBASIC5.38□□□□□ -1.55
LIG3P49916 IGKV2D-36-201ENST00000518643 226 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 AP005597.4-201ENST00000526762 229 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.38□□□□□ -1.55
LIG3P49916 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.38□□□□□ -1.55
LIG3P49916 AC008638.3-201ENST00000603341 463 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC013244.1-201ENST00000604279 193 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AL162730.1-201ENST00000605734 292 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC103710.3-201ENST00000608157 948 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AP001005.3-201ENST00000622049 129 ntBASIC5.38□□□□□ -1.55
LIG3P49916 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 MIR4496-201ENST00000635896 61 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.38□□□□□ -1.55
LIG3P49916 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG3P49916 SALL4P2-201ENST00000423288 2910 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AC005332.5-201ENST00000591222 2919 ntBASIC5.38□□□□□ -1.55
LIG3P49916 AL672167.1-205ENST00000641112 3080 ntBASIC5.38□□□□□ -1.55
LIG3P49916 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
LIG3P49916 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG3P49916 AC063976.2-201ENST00000425667 3556 ntBASIC5.37□□□□□ -1.55
LIG3P49916 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms