Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC026412.2-201ENST00000512270 1075 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AP001636.2-201ENST00000525517 696 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 EEF1B2P4-201ENST00000551398 348 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 LARP7P2-201ENST00000575306 125 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 MIR3690-201ENST00000580266 75 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RPL23AP92-201ENST00000603609 255 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC135507.2-201ENST00000612443 309 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC018755.4-201ENST00000619715 454 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC022509.4-201ENST00000621404 572 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 OR6C71P-202ENST00000641886 1107 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC109315.1-201ENST00000584143 1347 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC027287.1-201ENST00000553115 1453 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC116096.1-201ENST00000566804 2314 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.4□□□□□ -1.86
TNFRSF4P43489 CR383658.2-201ENST00000547576 1525 ntBASIC3.4□□□□□ -1.86
TNFRSF4P43489 EXOC5P1-201ENST00000510543 1969 ntBASIC3.4□□□□□ -1.86
TNFRSF4P43489 NACA3P-201ENST00000359690 648 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNA5SP374-201ENST00000362939 125 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNU6-283P-201ENST00000364788 107 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 ANAPC10P1-201ENST00000395991 556 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL357075.1-201ENST00000404107 726 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 MTATP6P20-201ENST00000414147 562 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 PTP4A1P5-201ENST00000420305 455 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL353678.1-201ENST00000422735 741 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC092648.1-201ENST00000425870 423 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 USP9YP24-201ENST00000434374 697 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 OR10R1P-201ENST00000441524 1141 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 USP9YP17-201ENST00000444617 696 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 HMGN2P7-201ENST00000456186 273 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPL21P104-201ENST00000464143 478 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPS3AP43-201ENST00000479743 781 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPL7P38-201ENST00000488396 739 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNU6-27P-201ENST00000516146 107 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AP001372.4-201ENST00000524889 472 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 MTND1P24-201ENST00000552175 861 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AGGF1P5-201ENST00000567900 919 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 BNIP3P38-201ENST00000601117 544 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 XIAPP1-201ENST00000603162 600 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC055876.5-201ENST00000605667 259 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC011816.2-201ENST00000607089 556 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC009464.1-201ENST00000615731 469 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC120349.2-201ENST00000625002 298 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 U6.101-201ENST00000637707 76 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 KPNA2P2-201ENST00000419546 1489 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 GNG5P1-201ENST00000255500 204 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 RNU6-413P-201ENST00000384115 107 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AL391417.1-201ENST00000404100 426 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RN7SKP56-201ENST00000410513 331 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RNU2-15P-201ENST00000410692 191 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 USP9YP31-201ENST00000431405 881 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL23AP74-201ENST00000437246 471 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL39P6-201ENST00000448289 150 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 snoU109.4-201ENST00000458953 143 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AP001992.1-205ENST00000462248 379 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL23AP67-201ENST00000465341 474 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 S100A11P2-201ENST00000467589 312 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC109925.1-201ENST00000478069 331 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPS4XP13-201ENST00000483219 789 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms