Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AC026412.2-201ENST00000512270 1075 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AP001636.2-201ENST00000525517 696 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 EEF1B2P4-201ENST00000551398 348 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 LARP7P2-201ENST00000575306 125 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 MIR3690-201ENST00000580266 75 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 RPL23AP92-201ENST00000603609 255 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC135507.2-201ENST00000612443 309 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC018755.4-201ENST00000619715 454 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC022509.4-201ENST00000621404 572 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 OR6C71P-202ENST00000641886 1107 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC109315.1-201ENST00000584143 1347 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC027287.1-201ENST00000553115 1453 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 AC116096.1-201ENST00000566804 2314 ntBASIC3.41□□□□□ -1.86
TNFRSF4P43489 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
TNFRSF4P43489 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.4□□□□□ -1.86
TNFRSF4P43489 CR383658.2-201ENST00000547576 1525 ntBASIC3.4□□□□□ -1.86
TNFRSF4P43489 EXOC5P1-201ENST00000510543 1969 ntBASIC3.4□□□□□ -1.86
TNFRSF4P43489 NACA3P-201ENST00000359690 648 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNA5SP374-201ENST00000362939 125 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNU6-283P-201ENST00000364788 107 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 ANAPC10P1-201ENST00000395991 556 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL357075.1-201ENST00000404107 726 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 MTATP6P20-201ENST00000414147 562 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 PTP4A1P5-201ENST00000420305 455 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AL353678.1-201ENST00000422735 741 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC092648.1-201ENST00000425870 423 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 USP9YP24-201ENST00000434374 697 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 OR10R1P-201ENST00000441524 1141 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 USP9YP17-201ENST00000444617 696 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 HMGN2P7-201ENST00000456186 273 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPL21P104-201ENST00000464143 478 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPS3AP43-201ENST00000479743 781 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 RPL7P38-201ENST00000488396 739 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 RNU6-27P-201ENST00000516146 107 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AP001372.4-201ENST00000524889 472 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 MTND1P24-201ENST00000552175 861 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AGGF1P5-201ENST00000567900 919 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 BNIP3P38-201ENST00000601117 544 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 XIAPP1-201ENST00000603162 600 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC055876.5-201ENST00000605667 259 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC011816.2-201ENST00000607089 556 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC009464.1-201ENST00000615731 469 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC120349.2-201ENST00000625002 298 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 U6.101-201ENST00000637707 76 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.4□□□□□ -1.87
TNFRSF4P43489 KPNA2P2-201ENST00000419546 1489 ntBASIC3.4□□□□□ -1.87
TNFRSF4P43489 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
TNFRSF4P43489 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
TNFRSF4P43489 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 GNG5P1-201ENST00000255500 204 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 RNU6-413P-201ENST00000384115 107 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AL391417.1-201ENST00000404100 426 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RN7SKP56-201ENST00000410513 331 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RNU2-15P-201ENST00000410692 191 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 USP9YP31-201ENST00000431405 881 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL23AP74-201ENST00000437246 471 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL39P6-201ENST00000448289 150 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 snoU109.4-201ENST00000458953 143 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AP001992.1-205ENST00000462248 379 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPL23AP67-201ENST00000465341 474 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 S100A11P2-201ENST00000467589 312 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC109925.1-201ENST00000478069 331 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 RPS4XP13-201ENST00000483219 789 ntBASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.39□□□□□ -1.87
TNFRSF4P43489 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms