Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR4506-201ENST00000584693 77 ntBASIC3.54□□□□□ -1.84
CUX1P39880 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CUX1P39880 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.53□□□□□ -1.84
CUX1P39880 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CUX1P39880 RNA5SP344-201ENST00000411081 104 ntBASIC3.53□□□□□ -1.84
CUX1P39880 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.53□□□□□ -1.84
CUX1P39880 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.53□□□□□ -1.84
CUX1P39880 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.53□□□□□ -1.84
CUX1P39880 AC023043.2-201ENST00000589678 1026 ntBASIC3.53□□□□□ -1.84
CUX1P39880 MIR8070-201ENST00000616510 88 ntBASIC3.53□□□□□ -1.84
CUX1P39880 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.85
CUX1P39880 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CUX1P39880 DEFA7P-201ENST00000382676 285 ntBASIC3.52□□□□□ -1.85
CUX1P39880 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.52□□□□□ -1.85
CUX1P39880 AC091179.1-201ENST00000461606 579 ntBASIC3.52□□□□□ -1.85
CUX1P39880 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.52□□□□□ -1.85
CUX1P39880 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.52□□□□□ -1.85
CUX1P39880 AL161431.1-201ENST00000618966 4205 ntBASIC3.52□□□□□ -1.85
CUX1P39880 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.52□□□□□ -1.85
CUX1P39880 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.51□□□□□ -1.85
CUX1P39880 SPA17P1-201ENST00000416656 452 ntBASIC3.51□□□□□ -1.85
CUX1P39880 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.51□□□□□ -1.85
CUX1P39880 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.51□□□□□ -1.85
CUX1P39880 AC091917.2-201ENST00000505002 744 ntBASIC3.51□□□□□ -1.85
CUX1P39880 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.51□□□□□ -1.85
CUX1P39880 CBX3P5-201ENST00000552017 521 ntBASIC3.51□□□□□ -1.85
CUX1P39880 VN1R7P-201ENST00000619242 903 ntBASIC3.51□□□□□ -1.85
CUX1P39880 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.51□□□□□ -1.85
CUX1P39880 AL136964.1-201ENST00000622038 2990 ntBASIC3.51□□□□□ -1.85
CUX1P39880 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.5□□□□□ -1.85
CUX1P39880 RPS27AP18-201ENST00000515536 459 ntBASIC3.5□□□□□ -1.85
CUX1P39880 RNA5SP385-201ENST00000515947 110 ntBASIC3.5□□□□□ -1.85
CUX1P39880 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CUX1P39880 AC010198.2-201ENST00000550612 259 ntBASIC3.5□□□□□ -1.85
CUX1P39880 OR4H12P-201ENST00000556269 907 ntBASIC3.5□□□□□ -1.85
CUX1P39880 AC110588.1-201ENST00000559699 137 ntBASIC3.5□□□□□ -1.85
CUX1P39880 AC073348.1-201ENST00000623002 331 ntBASIC3.5□□□□□ -1.85
CUX1P39880 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
CUX1P39880 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CUX1P39880 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
CUX1P39880 AL450326.2-201ENST00000421913 1962 ntBASIC3.5□□□□□ -1.85
CUX1P39880 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CUX1P39880 RNU6-321P-201ENST00000410912 106 ntBASIC3.49□□□□□ -1.85
CUX1P39880 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.49□□□□□ -1.85
CUX1P39880 AC108667.1-201ENST00000428618 249 ntBASIC3.49□□□□□ -1.85
CUX1P39880 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.49□□□□□ -1.85
CUX1P39880 SNORA70.14-201ENST00000516205 110 ntBASIC3.49□□□□□ -1.85
CUX1P39880 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.49□□□□□ -1.85
CUX1P39880 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.49□□□□□ -1.85
CUX1P39880 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CUX1P39880 snoU13.31-201ENST00000607291 104 ntBASIC3.49□□□□□ -1.85
CUX1P39880 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CUX1P39880 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC3.49□□□□□ -1.85
CUX1P39880 PNPT1P2-201ENST00000456768 2050 ntBASIC3.49□□□□□ -1.85
CUX1P39880 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CUX1P39880 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC3.49□□□□□ -1.85
CUX1P39880 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.49□□□□□ -1.85
CUX1P39880 RPL7P54-201ENST00000438336 674 ntBASIC3.49□□□□□ -1.85
CUX1P39880 AC003989.2-201ENST00000440224 169 ntBASIC3.49□□□□□ -1.85
CUX1P39880 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.49□□□□□ -1.85
CUX1P39880 AC013562.2-201ENST00000611632 603 ntBASIC3.49□□□□□ -1.85
CUX1P39880 AP003499.2-201ENST00000624100 483 ntBASIC3.49□□□□□ -1.85
CUX1P39880 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.49□□□□□ -1.85
CUX1P39880 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CUX1P39880 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.48□□□□□ -1.85
CUX1P39880 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CUX1P39880 MIR7-2-201ENST00000384970 110 ntBASIC3.48□□□□□ -1.85
CUX1P39880 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.48□□□□□ -1.85
CUX1P39880 Z82205.1-201ENST00000428456 297 ntBASIC3.48□□□□□ -1.85
CUX1P39880 AC245517.4-201ENST00000448601 281 ntBASIC3.48□□□□□ -1.85
CUX1P39880 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC3.48□□□□□ -1.85
CUX1P39880 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.48□□□□□ -1.85
CUX1P39880 RNU6-84P-201ENST00000607737 102 ntBASIC3.48□□□□□ -1.85
CUX1P39880 MIR6715B-201ENST00000637172 77 ntBASIC3.48□□□□□ -1.85
CUX1P39880 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CUX1P39880 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.47□□□□□ -1.85
CUX1P39880 EI24P1-201ENST00000416584 867 ntBASIC3.47□□□□□ -1.85
CUX1P39880 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.47□□□□□ -1.85
CUX1P39880 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.47□□□□□ -1.85
CUX1P39880 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.47□□□□□ -1.85
CUX1P39880 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.47□□□□□ -1.85
CUX1P39880 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.47□□□□□ -1.85
CUX1P39880 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CUX1P39880 DYNLT3P1-201ENST00000378574 347 ntBASIC3.46□□□□□ -1.86
CUX1P39880 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.46□□□□□ -1.86
CUX1P39880 TRAV11-201ENST00000539512 339 ntBASIC3.46□□□□□ -1.86
CUX1P39880 GNAI2P1-201ENST00000541815 315 ntBASIC3.46□□□□□ -1.86
CUX1P39880 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.46□□□□□ -1.86
CUX1P39880 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.46□□□□□ -1.86
CUX1P39880 MIR5002-201ENST00000584713 97 ntBASIC3.46□□□□□ -1.86
CUX1P39880 AL359198.2-201ENST00000611836 194 ntBASIC3.46□□□□□ -1.86
CUX1P39880 AC016542.2-201ENST00000624201 619 ntBASIC3.46□□□□□ -1.86
CUX1P39880 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
CUX1P39880 AL359715.4-201ENST00000606629 1436 ntBASIC3.46□□□□□ -1.86
CUX1P39880 MIR6073-201ENST00000352083 89 ntBASIC3.45□□□□□ -1.86
CUX1P39880 RNU6-1140P-201ENST00000410517 106 ntBASIC3.45□□□□□ -1.86
CUX1P39880 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.45□□□□□ -1.86
CUX1P39880 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.45□□□□□ -1.86
CUX1P39880 AC093673.2-201ENST00000609674 331 ntBASIC3.45□□□□□ -1.86
CUX1P39880 AC010680.1-201ENST00000590024 3590 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms