Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RPL7P34-201ENST00000433316 712 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 MTCO2P20-201ENST00000437339 673 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC9P31274 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 MTND3P1-201ENST00000441336 220 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC022790.1-201ENST00000522872 204 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 MTATP6P15-201ENST00000527233 835 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 PDCL2P2-201ENST00000533651 189 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 MIR4504-201ENST00000577413 92 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC006504.3-201ENST00000586818 523 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 AC233280.2-201ENST00000603917 1070 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.21□□□□□ -1.74
HOXC9P31274 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC9P31274 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC9P31274 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC9P31274 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXC9P31274 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXC9P31274 RIOK3P1-201ENST00000418778 1528 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.21□□□□□ -1.74
HOXC9P31274 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC9P31274 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC9P31274 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
HOXC9P31274 DBF4P1-201ENST00000412976 1892 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
HOXC9P31274 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 RNU6-984P-201ENST00000363236 109 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC9P31274 AC119751.3-201ENST00000399720 670 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC9P31274 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC9P31274 AC008065.1-201ENST00000428525 348 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC9P31274 AL133477.1-201ENST00000457472 514 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC9P31274 snoU13.7-201ENST00000459220 104 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC9P31274 MTND2P14-201ENST00000482139 351 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC9P31274 PCBP2P3-201ENST00000509726 843 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC009812.2-201ENST00000517657 457 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.2□□□□□ -1.74
HOXC9P31274 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.2□□□□□ -1.74
HOXC9P31274 AGGF1P8-201ENST00000562979 1000 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC021171.1-201ENST00000603137 706 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC025811.1-201ENST00000604312 472 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AL359535.1-201ENST00000612100 1087 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC073348.1-201ENST00000623002 331 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AC099506.2-201ENST00000623074 221 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 AL359715.5-201ENST00000623431 443 ntBASIC4.2□□□□□ -1.74
HOXC9P31274 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.2□□□□□ -1.74
HOXC9P31274 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.2□□□□□ -1.74
HOXC9P31274 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
HOXC9P31274 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HOXC9P31274 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC9P31274 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 AC025125.1-201ENST00000624743 1922 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 OR1S2-201ENST00000302592 978 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 SUGT1P1-201ENST00000379514 476 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 HSPD1P16-201ENST00000402302 394 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 RNU6-757P-201ENST00000410334 100 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC9P31274 CST9LP2-201ENST00000437612 320 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 AC016696.1-201ENST00000446949 318 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 MTCO2P25-201ENST00000447065 681 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 HMGN3P1-201ENST00000453847 193 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 ANKRD26P4-201ENST00000455755 950 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 MTND1P16-201ENST00000465177 898 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC9P31274 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 AC021146.8-201ENST00000507455 733 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC9P31274 AC005351.1-201ENST00000511152 786 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AC109445.1-201ENST00000512356 383 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 HIGD1AP3-201ENST00000515857 278 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC9P31274 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 MTCYBP27-201ENST00000555160 670 ntBASIC4.19□□□□□ -1.74
HOXC9P31274 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC9P31274 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms